Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A20
         (833 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC048285-1|AAH48285.1|  475|Homo sapiens solute carrier family 4...    40   0.008
AL139041-1|CAI95196.1|  475|Homo sapiens thymic stromal co-trans...    40   0.008
AF242557-1|AAK28343.1|  475|Homo sapiens thymic stromal co-trans...    40   0.008
AK055571-1|BAB70960.1|  475|Homo sapiens protein ( Homo sapiens ...    40   0.011

>BC048285-1|AAH48285.1|  475|Homo sapiens solute carrier family 46,
           member 2 protein.
          Length = 475

 Score = 40.3 bits (90), Expect = 0.008
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
 Frame = +3

Query: 321 LYTIRK-FGFTEVEYSIYGTINIVVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGC 497
           L+ +R+  G+ +V+   YG        + +   +LV S+    +D+ +  +  VS  +G 
Sbjct: 306 LFVLREPLGWNQVQVG-YGMAAGYTIFITSFLGVLVFSRCF--RDTTMIMIGMVSFGSGA 362

Query: 498 LMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIY 677
           L+ A       FY A    +F+   +T IRS  +K +      K+  ++ ++ +L   + 
Sbjct: 363 LLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVVT 422

Query: 678 MPASSYIYMSTIETFPGAFYLFDAALTVVXL 770
               + IY  T++ F G+ +   + L+ + +
Sbjct: 423 STLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453


>AL139041-1|CAI95196.1|  475|Homo sapiens thymic stromal
           co-transporter protein.
          Length = 475

 Score = 40.3 bits (90), Expect = 0.008
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
 Frame = +3

Query: 321 LYTIRK-FGFTEVEYSIYGTINIVVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGC 497
           L+ +R+  G+ +V+   YG        + +   +LV S+    +D+ +  +  VS  +G 
Sbjct: 306 LFVLREPLGWNQVQVG-YGMAAGYTIFITSFLGVLVFSRCF--RDTTMIMIGMVSFGSGA 362

Query: 498 LMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIY 677
           L+ A       FY A    +F+   +T IRS  +K +      K+  ++ ++ +L   + 
Sbjct: 363 LLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVVT 422

Query: 678 MPASSYIYMSTIETFPGAFYLFDAALTVVXL 770
               + IY  T++ F G+ +   + L+ + +
Sbjct: 423 STLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453


>AF242557-1|AAK28343.1|  475|Homo sapiens thymic stromal
           co-transporter protein.
          Length = 475

 Score = 40.3 bits (90), Expect = 0.008
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
 Frame = +3

Query: 321 LYTIRK-FGFTEVEYSIYGTINIVVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGC 497
           L+ +R+  G+ +V+   YG        + +   +LV S+    +D+ +  +  VS  +G 
Sbjct: 306 LFVLREPLGWNQVQVG-YGMAAGYTIFITSFLGVLVFSRCF--RDTTMIMIGMVSFGSGA 362

Query: 498 LMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIY 677
           L+ A       FY A    +F+   +T IRS  +K +      K+  ++ ++ +L   + 
Sbjct: 363 LLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVVT 422

Query: 678 MPASSYIYMSTIETFPGAFYLFDAALTVVXL 770
               + IY  T++ F G+ +   + L+ + +
Sbjct: 423 STLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453


>AK055571-1|BAB70960.1|  475|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31009 fis, clone HLUNG2000142, moderately
           similar to Mus musculus putative thymic stromal
           co-transporter TSCOT mRNA. ).
          Length = 475

 Score = 39.9 bits (89), Expect = 0.011
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
 Frame = +3

Query: 321 LYTIRK-FGFTEVEYSIYGTINIVVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGC 497
           L+ +R+  G+ +V+   YG        + +   +LV S+    +D+ +  +  VS  +G 
Sbjct: 306 LFVLREPLGWNQVQVG-YGMAAGYTIFITSFLGVLVFSRCF--RDTTMIMIGMVSFGSGA 362

Query: 498 LMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIY 677
           L+ A       FY A    +F+   +T IRS  +K +      K+  ++ ++ +L   + 
Sbjct: 363 LLLAFVKETYMFYIARAAMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVVT 422

Query: 678 MPASSYIYMSTIETFPGAFYLFDAALTVVXL 770
               + IY  T++ F G+ +   + L+ + +
Sbjct: 423 STLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,192,270
Number of Sequences: 237096
Number of extensions: 2188059
Number of successful extensions: 3768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3768
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)