Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A20
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    30   2.3  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    30   2.3  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    30   2.3  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
           presynaptic activity protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -1

Query: 653 RDAYKCTQLGNFFCRNALSSY*PDCCQTSKTED-VE*RSGIEPLS--GRSKGEHEASCYP 483
           R   +CTQL    CR     Y  +CC   K E  V  ++GIE     G        S  P
Sbjct: 464 RSRPQCTQLITDLCRTQAVEYFAECCLCPKNETFVRVQAGIESAEQVGDKPKWFSESLMP 523

Query: 482 AHSR*SAYNAVLD 444
            H      N+ LD
Sbjct: 524 VHFMVYPNNSTLD 536


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform b protein.
          Length = 1408

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -1

Query: 653 RDAYKCTQLGNFFCRNALSSY*PDCCQTSKTED-VE*RSGIEPLS--GRSKGEHEASCYP 483
           R   +CTQL    CR     Y  +CC   K E  V  ++GIE     G        S  P
Sbjct: 464 RSRPQCTQLITDLCRTQAVEYFAECCLCPKNETFVRVQAGIESAEQVGDKPKWFSESLMP 523

Query: 482 AHSR*SAYNAVLD 444
            H      N+ LD
Sbjct: 524 VHFMVYPNNSTLD 536


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform a protein.
          Length = 1409

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -1

Query: 653 RDAYKCTQLGNFFCRNALSSY*PDCCQTSKTED-VE*RSGIEPLS--GRSKGEHEASCYP 483
           R   +CTQL    CR     Y  +CC   K E  V  ++GIE     G        S  P
Sbjct: 464 RSRPQCTQLITDLCRTQAVEYFAECCLCPKNETFVRVQAGIESAEQVGDKPKWFSESLMP 523

Query: 482 AHSR*SAYNAVLD 444
            H      N+ LD
Sbjct: 524 VHFMVYPNNSTLD 536


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/85 (21%), Positives = 37/85 (43%)
 Frame = +2

Query: 299 KGFPSVLFVHNKEIWLYGGGIQYLWDN*YRRRSFGNHILYISAQQTNECPRQHYRRFSGS 478
           +G PS     N+     GGG Q  + N +  R F   I   +     +  +  Y+R S +
Sbjct: 45  QGKPSRSLSRNRAGQSGGGGRQRRYSNSFEDRDFVQRIEDRNTDPVEQNTKDPYKRLSAN 104

Query: 479 EQDSRMPHVRPCSDQTMVLFRSSIQ 553
            +  R  ++    D T++ ++ +++
Sbjct: 105 AK--RFNYLHKLDDNTLIAYKDNLK 127


>Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical
           protein F59A1.13 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +3

Query: 573 LTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAA 752
           +T +  I     PT E     A++     L+  I MP S ++  S    +   +Y+F  +
Sbjct: 108 MTVVGVIPGTWAPTSETGTFMAILSCVFQLSMIICMPVSGFLCESRF-GWRSIYYIFGGS 166

Query: 753 LTVVXLCLFGMIY 791
            T++   +F + Y
Sbjct: 167 -TIIFYAIFYIFY 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,757
Number of Sequences: 27780
Number of extensions: 347312
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)