Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_A16
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 49 4e-07
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 27 1.1
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 27 1.4
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 26 3.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.3
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 4.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 5.7
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 25 7.5
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po... 24 9.9
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 48.8 bits (111), Expect = 4e-07
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +3
Query: 24 SQKLLXECGLVRPTTSGFFTLLPXARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWA 203
+ +LL + G ++P+ G F LP R +K+ +L+ + S GA +SL L+S +W
Sbjct: 27 ANQLLIDMGFIQPSMPGIFQYLPLGLRVQNKICDLLHISMRSLGASAISLAHLSSKEIWE 86
Query: 204 KTGRLXK 224
K+GR K
Sbjct: 87 KSGRWQK 93
Score = 37.9 bits (84), Expect = 8e-04
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 253 DRHNKKYLLAPTYEEAIAELLSDLKPISYKQLPIILYQIXNKY 381
DR++++ LAPT+EE + ++ + S KQLPI +YQI K+
Sbjct: 103 DRNDREMCLAPTHEEDVTRTMATIID-SQKQLPIRVYQIGRKF 144
Score = 34.7 bits (76), Expect = 0.007
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 386 DELRPKHGLLRAREFSMLDAY 448
DELRP+ GLLR REF M D Y
Sbjct: 146 DELRPRGGLLRGREFMMKDLY 166
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 66 TSGFFTLLPXARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWAKTG 212
T G LP R ++L + ++ + G + + P + LW K+G
Sbjct: 64 TPGSIFFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDLWEKSG 112
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 227 LLQSY*PWKIDTTKNICWLRHTKRQSRSYCQTSSRSHTSNYRLYYIRLXIN 379
+L+SY K +T C L+H C SS ++ Y LYY IN
Sbjct: 139 ILRSYEVKKRVSTLLQCCLKHYDLCIPVICTLSSNPKSAKYLLYYTSFIIN 189
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 386 DELRPKHGLLRAREFSMLD 442
+E+ P+ GLLR REF M +
Sbjct: 254 NEISPRSGLLRVREFLMAE 272
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 283 PTYEEAIAELLSDLKPISYKQLP 351
P Y EAI + L+P Y+QLP
Sbjct: 98 PHYAEAIVPIQQVLQPQQYRQLP 120
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 254 IDTTKNICWLRHTKRQSRSYCQTSSRSHTS 343
+DT + + WL ++RS T++ H+S
Sbjct: 653 LDTPEQVTWLLDQASKNRSVAATNANEHSS 682
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 5.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 322 LKPISYKQLPIILYQIXNKY 381
L P+ + P++L+QI +KY
Sbjct: 1134 LSPVDFANNPLLLFQIISKY 1153
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 276 VGSDIRRGNRGVIVRPQADLIQATTDYIIS 365
+GS RRG+RG V DL A +Y I+
Sbjct: 178 IGSSGRRGDRGKTVLTVDDLSAALNEYGIN 207
>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 108 LDKLENLIKTCIESSGAQRLSLPALTSAGLWAKTGRL 218
LDKL + ++ ++ LSL + AG W K+GR+
Sbjct: 341 LDKLLAFVNERLKPELSEPLSLAQMLEAGSW-KSGRI 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,668
Number of Sequences: 5004
Number of extensions: 30040
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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