Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A16
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0392 + 8504856-8505041,8505099-8505143,8505836-8506404,850...    29   2.4  
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178...    28   3.2  
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519...    27   7.4  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    27   9.8  

>09_02_0392 +
           8504856-8505041,8505099-8505143,8505836-8506404,
           8509267-8509585
          Length = 372

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 426 SLALSSPCFGRNSSPVFIXNLI 361
           SL L+SP  G   SP+FI NL+
Sbjct: 41  SLLLTSPVIGARCSPIFIINLL 62


>04_04_0524 -
           25916869-25916876,25917352-25917506,25917712-25917841,
           25918013-25918094,25918180-25918213,25918271-25918327,
           25918686-25918791,25920755-25920881
          Length = 232

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 115 NLRTSLKPA*NLLERKDCHCRLSRQRG 195
           NL+T L+    L++ +  HC+LS QRG
Sbjct: 79  NLKTILQGGNYLVQGRKLHCKLSNQRG 105


>10_08_0570 +
           18851451-18851723,18851894-18851928,18851929-18851998,
           18852089-18852187,18852276-18852365,18852430-18852920,
           18853015-18853102,18853204-18853245,18853548-18853574,
           18853817-18853996,18854249-18854416,18854501-18854710
          Length = 590

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 393 CGRNTGCSGRGSSRCWTRTER 455
           CGR+ G    GSSR W R  R
Sbjct: 30  CGRSYGRGSGGSSRSWERERR 50


>03_05_0944 +
           29046793-29046922,29048091-29048464,29048556-29048687,
           29048829-29049210,29049370-29049513,29049593-29049777,
           29049925-29050051,29050603-29050676,29051071-29051147,
           29051256-29051292,29051453-29051619,29051800-29051983,
           29052053-29052130,29052451-29052570,29052648-29052707,
           29053057-29053179,29053848-29053941,29054019-29054197,
           29054737-29055039,29055373-29055474,29055553-29055693,
           29055831-29055995,29056168-29056344,29056432-29056554,
           29057787-29057867,29057983-29058099,29058214-29058386,
           29058846-29058923,29058994-29059141,29059755-29059877,
           29060015-29060071,29060145-29060255,29060382-29060573,
           29060690-29060863,29061263-29061373,29061462-29061531,
           29061734-29061812,29061898-29062000,29062086-29062256,
           29062348-29062470,29062548-29062661,29062935-29063041,
           29063117-29063168,29063245-29063351,29063589-29063703,
           29063819-29063929,29064016-29064153,29064230-29064352,
           29064535-29064606,29064774-29064886,29066780-29067110,
           29067199-29067381,29068669-29068863,29068943-29069110,
           29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 102 RALDKLENLIKTCIESSGAQRLSLPALTSAGLWA 203
           R    L + + TC +  G + + L  L++ G WA
Sbjct: 371 RLAPSLSSFLLTCYKDDGIEEVKLAVLSALGSWA 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,943
Number of Sequences: 37544
Number of extensions: 210325
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)