Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_A16
(466 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82060-10|CAN86903.1| 138|Caenorhabditis elegans Hypothetical p... 58 3e-09
Z82060-7|CAB04884.1| 454|Caenorhabditis elegans Hypothetical pr... 58 3e-09
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.8
U40421-2|AAA81438.1| 453|Caenorhabditis elegans Hypothetical pr... 28 3.8
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 27 5.0
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 27 8.8
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 27 8.8
>Z82060-10|CAN86903.1| 138|Caenorhabditis elegans Hypothetical
protein T27F6.5d protein.
Length = 138
Score = 58.0 bits (134), Expect = 3e-09
Identities = 24/61 (39%), Positives = 40/61 (65%)
Frame = +3
Query: 33 LLXECGLVRPTTSGFFTLLPXARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWAKTG 212
+L E G + PT GF++LLP +R +DKL ++ ++SGA ++++P + + LW KTG
Sbjct: 25 MLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEKTG 84
Query: 213 R 215
R
Sbjct: 85 R 85
>Z82060-7|CAB04884.1| 454|Caenorhabditis elegans Hypothetical
protein T27F6.5a protein.
Length = 454
Score = 58.0 bits (134), Expect = 3e-09
Identities = 24/61 (39%), Positives = 40/61 (65%)
Frame = +3
Query: 33 LLXECGLVRPTTSGFFTLLPXARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWAKTG 212
+L E G + PT GF++LLP +R +DKL ++ ++SGA ++++P + + LW KTG
Sbjct: 25 MLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEKTG 84
Query: 213 R 215
R
Sbjct: 85 R 85
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 253 DRHNKKYLLAPTYEEAIAELLSDLKPISYKQLPIILYQIXNKY 381
DR L PT EE EL++ L P+ Q P+I+YQI K+
Sbjct: 98 DRQQNHMCLQPTAEEMCTELIATLSPLKKSQFPLIVYQIGEKF 140
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 320 TSSRSHTSNYRLYYIRLXINTGDELRPKHGLLRAREFSMLDAY 448
T S S + L ++ DE+ P+ GL+R R+F M D Y
Sbjct: 120 TLSPLKKSQFPLIVYQIGEKFRDEMNPRFGLMRGRQFLMKDMY 162
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 EITCKSQKLLXECGLVRPTTSGFFT-LLPXARRALDKLENLIKTCIE 146
EITC S K+L E + P GF + L RR + +++T +E
Sbjct: 1552 EITCVSLKMLLEMFMSLPLHDGFTSDLNELQRRQRQHCDGIVQTVVE 1598
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 EITCKSQKLLXECGLVRPTTSGFFT-LLPXARRALDKLENLIKTCIE 146
EITC S K+L E + P GF + L RR + +++T +E
Sbjct: 1549 EITCVSLKMLLEMFMSLPLHDGFTSDLNELQRRQRQHCDGIVQTVVE 1595
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 EITCKSQKLLXECGLVRPTTSGFFT-LLPXARRALDKLENLIKTCIE 146
EITC S K+L E + P GF + L RR + +++T +E
Sbjct: 1552 EITCVSLKMLLEMFMSLPLHDGFTSDLNELQRRQRQHCDGIVQTVVE 1598
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 EITCKSQKLLXECGLVRPTTSGFFT-LLPXARRALDKLENLIKTCIE 146
EITC S K+L E + P GF + L RR + +++T +E
Sbjct: 1549 EITCVSLKMLLEMFMSLPLHDGFTSDLNELQRRQRQHCDGIVQTVVE 1595
>U40421-2|AAA81438.1| 453|Caenorhabditis elegans Hypothetical
protein C02B8.5 protein.
Length = 453
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 275 CWLRHTKRQSRSYCQTSSRSHTSNYRLYYI 364
CW S+ C T+ RS+ R+YY+
Sbjct: 75 CWSTMYNTASKDVCPTALRSNVDYVRIYYV 104
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 284 RHTKRQSRSYCQTSSRSHTSNYR 352
RH+KR+SRS ++SS S T Y+
Sbjct: 182 RHSKRRSRSRSRSSSGSRTPPYK 204
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 386 DELRPKHGLLRAREFSMLD 442
+E+ P+ GL+R REF+M +
Sbjct: 278 NEISPRQGLIRVREFTMCE 296
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 386 DELRPKHGLLRAREFSMLD 442
+E+ P+ GL+R REF+M +
Sbjct: 342 NEISPRQGLIRVREFTMCE 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,694,097
Number of Sequences: 27780
Number of extensions: 174855
Number of successful extensions: 479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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