Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A14
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0207 - 32356951-32357058,32357187-32357256,32357363-323575...    29   2.0  
10_07_0180 - 13879648-13880064                                         28   3.5  
06_01_0258 - 1913408-1913506,1913593-1913631,1913720-1913859,191...    27   6.0  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    27   6.0  
12_01_0305 + 2304572-2304677,2305414-2305481,2305585-2305716,230...    27   8.0  
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665...    27   8.0  

>03_06_0207 -
           32356951-32357058,32357187-32357256,32357363-32357553,
           32358011-32358106,32359014-32359120,32359470-32359512,
           32359806-32359895,32360025-32360096,32362390-32362605
          Length = 330

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 42  CPTNSSFSSLCWPCLWPLQALRQPQSPAPQLLPYTGLVLRLYTRLSTSCDISIRFSGCCP 221
           C T   F ++       +QAL     P+P+LL +   ++R Y RLS +       + C P
Sbjct: 228 CATAERFFAVASVLSQMVQALAD--QPSPRLLKH---IIRCYLRLSENSRACTALNSCLP 282

Query: 222 HHLLCAAIGNLLR 260
           + L    + N L+
Sbjct: 283 NALKDGTLNNFLQ 295


>10_07_0180 - 13879648-13880064
          Length = 138

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -1

Query: 139 GRSCG----AGDWGCLRAWSGQRHGQQSE 65
           GR CG    AG  G LR W G RHG + +
Sbjct: 74  GRRCGGCRRAGATGRLRRWGGVRHGGERD 102


>06_01_0258 -
           1913408-1913506,1913593-1913631,1913720-1913859,
           1914148-1914154,1914270-1914440,1914541-1914712,
           1915367-1915741,1915892-1915910,1916508-1916581,
           1916744-1916937
          Length = 429

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 87  WPLQALRQPQSPAPQLLP 140
           WPL A+R+P SPA +LLP
Sbjct: 20  WPL-AVRRPPSPAARLLP 36


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 3   LASVLXPSSQQTTCPTNSSFSSLCWPCLWPLQALRQPQSPAPQLLP 140
           L  +L P     + P N++      P    LQ L  P SP P  LP
Sbjct: 18  LLLLLAPYCSAVSVPNNNTHHRSSSPTQTTLQQLHSPDSPPPPPLP 63


>12_01_0305 +
           2304572-2304677,2305414-2305481,2305585-2305716,
           2307813-2307971,2308170-2308547
          Length = 280

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +1

Query: 43  VQQILRFLRSVGRVSGRSKPXGSPSHQHRNFFHTQAWXXVXTPGLVPPVISPYASPAAVP 222
           V  +LR    +  + G   P     HQ R   H Q       P  + P+  P    AA+P
Sbjct: 144 VAGMLRAASPIQVIVGSFLPNNLKQHQRRMGLHPQPSAAPAFPAPMAPLHPPPVLTAAMP 203

Query: 223 ITYSA 237
           I+ +A
Sbjct: 204 ISQAA 208


>07_03_1780 -
           29465873-29466130,29466236-29466335,29466473-29466559,
           29466682-29467000,29467097-29468567
          Length = 744

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 133 SCGAGDWGCLRAWSGQRHGQQSEENEEFVGHVVCCEE 23
           SCG GD   L   S     Q+ +E++   G+V   EE
Sbjct: 110 SCGCGDTPLLLEESDDDQYQEQQEDDAIAGYVAFMEE 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,895,130
Number of Sequences: 37544
Number of extensions: 174032
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)