Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A14
         (487 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK025837-1|BAB15254.1|  616|Homo sapiens protein ( Homo sapiens ...    33   0.70 
AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335...    31   2.2  
AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zip...    31   2.2  
AF332228-1|AAK13480.1|  230|Homo sapiens melanoma-associated cho...    30   5.0  

>AK025837-1|BAB15254.1|  616|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22184 fis, clone HRC00983. ).
          Length = 616

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 100 PXGSPSHQHRNFFHTQAWXXVXTPGLVPPVISPYASPAAVPITYSALP 243
           P  +PS Q  N           +P   PPV +P++ PA+ P++ SA P
Sbjct: 136 PLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATP 183


>AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335
           protein.
          Length = 1342

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -1

Query: 202 RMEISQEVLSRVXRRXTRPVYGRSCGAGDWGCLRAWSGQRHGQQSEENEE 53
           R      +L  +  R  RPV   +  AG  G LR WS     Q+ E  EE
Sbjct: 253 RSSTKATLLRHMRERHFRPVAAAAAAAGKKGRLRKWSTSTKSQEEEGPEE 302


>AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zipper
           co-transducer NIF1 protein.
          Length = 1342

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -1

Query: 202 RMEISQEVLSRVXRRXTRPVYGRSCGAGDWGCLRAWSGQRHGQQSEENEE 53
           R      +L  +  R  RPV   +  AG  G LR WS     Q+ E  EE
Sbjct: 253 RSSTKATLLRHMRERHFRPVAAAAAAAGKKGRLRKWSTSTKSQEEEGPEE 302


>AF332228-1|AAK13480.1|  230|Homo sapiens melanoma-associated
           chondroitin sulfate proteoglycan-like protein.
          Length = 230

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 42  CPTNSSFSSLCWPCL-WPLQALRQPQSPAPQLLPYT 146
           CPT S+  S CW C  W L ++  P +PA + L  T
Sbjct: 66  CPTGSTRPSWCWRCRPWSLTSM-WPMAPASRSLKET 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,544,356
Number of Sequences: 237096
Number of extensions: 931728
Number of successful extensions: 6418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6418
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)