Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A14
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.75 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   4.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 357 EAYI*IWLKFNAKSRKVHKSFLEMARNYF 271
           EA++ + L  N  S K HK  L    +YF
Sbjct: 33  EAFVDVTLACNEASLKAHKVVLSACSSYF 61


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 25  PRNKQHVQQILRFLRSVGRVSGRS 96
           PR K H +QI R ++   ++ GR+
Sbjct: 440 PRRKFHFKQIARAVKFTSKLFGRA 463


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 193 SPYASPAAVPITYSALPSATYYV 261
           SPYA+ A     ++A PSAT  V
Sbjct: 125 SPYAALAIAAQYFNAKPSATVAV 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,419
Number of Sequences: 438
Number of extensions: 1525
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)