Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A12
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.5  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   3.5  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   3.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   8.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   8.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   8.1  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   8.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 99   SCDLILQDAARLCERKKAQSTLRFGE 22
            S DL+L D ARLC RK      R+ +
Sbjct: 3474 SLDLLLNDLARLCSRKTLAPRPRYSK 3499


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 680 NLLNYIVFLRVTPFLPNWFI 739
           N+LN++  LR+ PF P  FI
Sbjct: 305 NILNHMTRLRIVPFAPGHFI 324


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 500 SILSGFLFPFYFALVLVCCCSAIGASLCFFLSNL 601
           SI   F+FPFY+ L+++   + IG S C   S L
Sbjct: 10  SIFQFFVFPFYYFLLII---TEIGFSSCIQYSGL 40


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 368 LEDAKQLGLVLDRYKDRYFYEVLFGVFL-VYIFLQTFAIPGSIFLSILSGFLFPFYFALV 544
           + D  Q+ L+   +   ++  +   V L   +FL+   + GS+++   S ++   +++L 
Sbjct: 286 IADIPQITLIFISFLFSFYVLIFIWVRLFARLFLRGSTLVGSVWVLPRSSWVLASFYSLH 345

Query: 545 LVCCCSAIGASLCFFLSNLLGK 610
            +  C+   A  C  +S+++ +
Sbjct: 346 FLWLCTFFHALQCAIISSIVSQ 367


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 588  SCQIFLERSLLENSSQKEQQSG 653
            SC +F E+S +EN   KE+ +G
Sbjct: 984  SCLVFQEKSEVENQRMKEELAG 1005


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 419 YFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPF 529
           YFY V+  + +V +   +F+I  ++FL+  +G L PF
Sbjct: 183 YFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDPF 219


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 175 LMKSNFINIYNXLLDVSNLCKHXN 104
           L   NF++I N L+ +  +C H N
Sbjct: 721 LASGNFMSIINCLMQLRKVCNHPN 744


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 630 KNFLTSFFPRRFDKKKHRLAPIAEQQQTNTSAK*KGKR 517
           K +LT F  R+ +++KH    + +Q++    A  K  R
Sbjct: 35  KEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLR 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,983
Number of Sequences: 5004
Number of extensions: 55424
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)