Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_A12
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0383 - 28497525-28497689,28497776-28497946,28498115-284983... 151 5e-37
04_04_0989 - 29948834-29948995,29949083-29949253,29949369-299496... 150 1e-36
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 139 3e-33
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275... 48 7e-06
01_06_1012 - 33806190-33807875,33807963-33808331 33 0.23
08_02_0650 - 19708479-19710507,19711033-19711889 29 4.9
01_06_1720 + 39421381-39421444,39422424-39422601,39422812-394229... 29 6.5
08_01_0010 + 80052-81419 28 8.5
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192... 28 8.5
>02_05_0383 -
28497525-28497689,28497776-28497946,28498115-28498385,
28499576-28499736
Length = 255
Score = 151 bits (367), Expect = 5e-37
Identities = 74/160 (46%), Positives = 107/160 (66%)
Frame = +2
Query: 359 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 538
P +L++ + L L+ Y Y +VL G VYIF+QTF IPG+IF+S+L+G LF
Sbjct: 44 PKNLQELQILTDHLEDYTSDYTVQVLVGYCAVYIFMQTFMIPGTIFMSLLAGALFGQLGG 103
Query: 539 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 718
+ LV + GAS C+FLS L+GK LV +P++ + K VAK ++ LLNY++FLRVTP
Sbjct: 104 VALVVFAATAGASSCYFLSKLIGKPLVFSLWPDKLGFFQKQVAKRREKLLNYMLFLRVTP 163
Query: 719 FLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAG 838
LPN FIN+++P++ VP F L TFIG+ P ++V ++AG
Sbjct: 164 TLPNTFINLASPIVDVPYHIFFLATFIGLIPAAYVTVRAG 203
>04_04_0989 -
29948834-29948995,29949083-29949253,29949369-29949639,
29950459-29950533,29950706-29950866
Length = 279
Score = 150 bits (364), Expect = 1e-36
Identities = 72/147 (48%), Positives = 100/147 (68%)
Frame = +2
Query: 398 LDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGAS 577
L+ Y Y +VL G VYIF+QTF IPG+IF+S+L+G LF + LV ++ GAS
Sbjct: 82 LENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRGVALVVFAASAGAS 141
Query: 578 LCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPV 757
CFFLS L+GK LV +P++ + K VAK ++ LLNY++FLRVTP LPN FIN+++P+
Sbjct: 142 SCFFLSKLIGKPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLPNTFINLASPI 201
Query: 758 IGVPLVPFALGTFIGVAPPSFVAIQAG 838
+ VP F L T IG+ P S+V ++AG
Sbjct: 202 VDVPYHIFLLATLIGLIPASYVTVRAG 228
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 139 bits (336), Expect = 3e-33
Identities = 66/161 (40%), Positives = 100/161 (62%)
Frame = +2
Query: 359 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 538
P L D + L L Y Y + G +YIF+QTF IPG+IF+S+L+G LF
Sbjct: 77 PRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKG 136
Query: 539 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 718
+LV + GAS C+F+S L+G+ L+ +PE+ + +AK K+ LLNY++FLR+TP
Sbjct: 137 GILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAKRKEKLLNYMLFLRITP 196
Query: 719 FLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQ 841
LPN FINM++P++ +P F T IG+ P S++ ++AG+
Sbjct: 197 TLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGR 237
>07_03_1534 +
27526170-27526265,27527030-27527091,27527488-27527542,
27528168-27528266,27528346-27528432,27528951-27529067,
27529479-27529571,27529915-27529945,27530188-27530357
Length = 269
Score = 48.4 bits (110), Expect = 7e-06
Identities = 33/130 (25%), Positives = 58/130 (44%)
Frame = +2
Query: 449 LVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 628
L Y+ L A+P SI L++ G+LF V + IGA+ F L +G+ V
Sbjct: 55 LAYVPLTVLAVPASI-LTLGGGYLFGLPVGFVADSIGATIGATAAFLLGRTIGRPYVLSK 113
Query: 629 FPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGVPLVPFALGTFIGVA 808
+ + A+A + ++ LR+ P LP +N V V + + L +++G+
Sbjct: 114 CKDYPKFQAVAIAIERSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVGIGEYMLASWLGMM 172
Query: 809 PPSFVAIQAG 838
P + + G
Sbjct: 173 PITLALVYVG 182
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 33.5 bits (73), Expect = 0.23
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 452 VYIFLQTFAIPGSIFLSILS-GFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 628
V IF+ G++ L + + G + Y+ + C+ C LS+LL K ++ F
Sbjct: 329 VDIFITNLLFGGALCLEVYAIGMMLISYWTYAALQGCN------CRTLSHLLFKS-IKYF 381
Query: 629 FPERAAEWSKAVAKHKDNLLNYIVFLRVT 715
PE +WS +A+H NL++Y + R T
Sbjct: 382 RPESRPKWSNLMAQH--NLISYCLHDRAT 408
>08_02_0650 - 19708479-19710507,19711033-19711889
Length = 961
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 775 AICIRNIYWCGSTIICSNSSRTTLHTLTLQVMLG 876
++CIRNIY C I+ + S H T Q +G
Sbjct: 743 SLCIRNIYPCSLDILAESWSPPPRHLQTFQTDMG 776
>01_06_1720 +
39421381-39421444,39422424-39422601,39422812-39422980,
39423101-39423170,39423259-39423487,39425130-39425340
Length = 306
Score = 28.7 bits (61), Expect = 6.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 835 CLNCYK*WWSHTNKCS*CK 779
C+NCY+ W++ + C C+
Sbjct: 230 CINCYRDWYTRSQSCPFCR 248
>08_01_0010 + 80052-81419
Length = 455
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 549 FVAVQQLVQVYVSSCQIFLERSLLENSSQKEQQSGQRQWQNTR 677
+V + LV + C I L E Q++QQ Q+QW R
Sbjct: 184 WVGLDGLVLAIAAVCFIVLVNGAGEEQEQRQQQQQQQQWWRRR 226
>03_05_0612 +
26117306-26118045,26118151-26118680,26119247-26119278,
26119910-26121175
Length = 855
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 850 YVRLSCLNCYK*WWSHTNKCS*CKWHQRHPNHWSRHI 740
Y+ LS NC K W CS KW +H H RHI
Sbjct: 280 YLALSRDNCLK-VWILDETCSKMKWELKHDKH-IRHI 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,094,194
Number of Sequences: 37544
Number of extensions: 317012
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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