Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A12
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.69 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.92 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 585 SSCQIFLERSLLENSSQKEQQSGQRQWQNTRTI 683
           +SC I+   S +EN+ + E QS  R+ +  +++
Sbjct: 373 NSCNIYNASSRMENNLRGETQSNYREMEKRQSV 405


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 518 LFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 628
           +FPF           +IG SL   L +L+GKK+   F
Sbjct: 211 IFPFCIVFGSDMIVRSIGNSLMVILPDLVGKKITHFF 247


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 449 LVYIFLQTFAIPGSIFLS-ILSGFLFPFYFALVLVCCCSAI 568
           LV + +  FA+   +  S  L GF+  FY A+ + C  S+I
Sbjct: 234 LVAVLVMPFAVYVLVNGSWSLPGFVCDFYIAMDVTCSTSSI 274


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 730 LVYKYVCSSDWGAFGAICIRNI 795
           L Y   CS DW    A C+  I
Sbjct: 15  LYYHQRCSRDWFRISAGCVSRI 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,808
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)