Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A10
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    50   3e-07
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    42   9e-05
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    36   0.008
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    30   0.40 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   1.6  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     27   2.8  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    27   2.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.6  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   8.7  

>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 10/186 (5%)
 Frame = +3

Query: 162 PGPMTL--QGTNTYLIGSGKNR--ILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHW 329
           P PM +  Q    YL+   + R   +VD  + N+      L   + +++ +++ I+ TH 
Sbjct: 7   PIPMWVGTQDNYAYLLLCEETRQAAIVDPAEVNV--VMPILKKKLKNKEIDLQAILTTHH 64

Query: 330 HHDHVGGVENIYKTIAKNPIIWKHKKSSEDSADNELPASIPIEWLRDGQEIKVEGATVKV 509
           H DH GG  N+ K     P +  +  S ++   +          L+D + +++    ++ 
Sbjct: 65  HADHSGGNLNLKKEF---PHVTIYGGSDQNGVSHV---------LQDKETLRIGNVQIEA 112

Query: 510 HHTPGHTTDHIVLTC--LEENILFSGDCILGEGTA-VFEDLYTYMK-SLQKILDLKPN-- 671
            HTP HT D I        E+ +F+GD +   G    FE     M  +L  +L   PN  
Sbjct: 113 LHTPCHTRDSICFYAHSSNEHAVFTGDTLFNAGCGRFFEGTAAEMHIALNAVLSSLPNNT 172

Query: 672 IIYPGH 689
           +IYPGH
Sbjct: 173 VIYPGH 178


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
 Frame = +3

Query: 183 GTN-TYLIGSGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVEN 359
           G N  YL+   K +I               + +    ++ ++++I+ TH H+DH GG E+
Sbjct: 15  GNNYAYLLTCDKTKITAIVDPAEPESVIPVIKEKTAKKEIDLQYILTTHHHYDHAGGNED 74

Query: 360 IYKTIAKNPIIWKHKKSSEDSADNELPASIPIEWLRDGQEIKVEGATVKVHHTPGHTTDH 539
           I   ++  P + K       S     P        +D +  KV    V+  HTP HT D 
Sbjct: 75  I---LSYFPSL-KVYGGKNASGVTYTP--------KDKEIFKVGEVQVEALHTPCHTQDS 122

Query: 540 I--VLTCLEENILFSGDCILGEGTAVF--EDLYTYMKSLQKILDLKPN--IIYPGH 689
           I   ++   +  +F+GD +   G   F   D      +L  +L   P+  + YPGH
Sbjct: 123 ICYYVSSPSKRAVFTGDTLFTSGCGRFFEGDAKQMDYALNHVLAALPDDTVTYPGH 178


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 207 SGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVENIYKTIAK 380
           S KN IL+D G+  +    +   D +  E A++  I ++H H DH  GV  + K   K
Sbjct: 536 SMKN-ILLDCGEGTLGRLSRQYGDNLKYEIASLRWIYISHMHADHHAGVIGVLKAWTK 592


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +3

Query: 168 PMTLQGTNTYLIGSGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVG 347
           P   +  ++Y +      I++D G+  I ++ +            ++ I +TH H DH  
Sbjct: 420 PTWRRSLSSYSVAIDGTVIMLDCGEGAISQFFRQYGTNTEPMLRKLKAIFITHLHSDHYL 479

Query: 348 GVENI 362
           G+ N+
Sbjct: 480 GLLNV 484


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 270 LSDVVNSEKANIEHIVLTHWHHDHVGGVENIYKTIAKNPIIWKHKKSSEDSADN 431
           ++ V N+E   I    LT +  D +   +NIY T  +N  + K + + E+++ N
Sbjct: 626 ITPVRNTEVQLINTAPLTEYEQDEINNYDNIYFTGLRN--VDKRRSADENTSSN 677


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 204 GSGKNRILVDTGDNNIPEYQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVENI 362
           G     IL+D G +      KH    V  +   ++ ++LTH H D + G++++
Sbjct: 62  GDRPKNILIDCGKHFYVSALKHF---VEHKIRYLDAVILTHDHADAINGMDDL 111


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 372 IAKNPIIWKHKKSSEDSADNELPASIPI 455
           +AK+    KH  S+ED  D+ LPA +PI
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPI 28


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 399 HKKSSEDSADNELPASIPIEWLR 467
           H K+++    NELP  IP  WLR
Sbjct: 584 HSKNTDKHVGNELPQDIP-SWLR 605


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
 Frame = +3

Query: 258 YQKHLSDVVNSEKANIEHIVLTHWHHDHVGGVENIYKTIAKNPIIWKHKKSSEDSADNEL 437
           Y   +S  ++S KA+    V  ++   +     N   T   NP         EDS DN  
Sbjct: 61  YGDSVSPAISSSKAHSTSSVSPYYSEKNESQALNADGTAFANPSFHSFGLPQEDSQDNTQ 120

Query: 438 PASIPIEWLRDGQEI-KVEGATVKVHHT--PGHTTDHIVLTCLEENIL 572
             S P   +    E+     AT + +++  P H++     +    NIL
Sbjct: 121 TYSTPYTTMNPSNEMHPYPPATFENNYSVLPDHSSQPNAYSFTGSNIL 168


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 735 LYNIQFFQRVPLLYSHDQGK*CL 667
           L+N+  FQ+V LL  H  G  CL
Sbjct: 297 LWNLATFQQVALLEGHSSGVTCL 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,198
Number of Sequences: 5004
Number of extensions: 76168
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)