Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A08
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    28   1.7  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   5.3  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   9.3  

>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 11  LSIRLSYWKDVAKXXSVKMSPNPFDRKHSVLRQALDRFIK 130
           LS  ++  K +     +K  P P+D KH+++R  L+  +K
Sbjct: 36  LSNLMARIKKIFTQEELKQIPCPYDHKHTIVRHRLEYHLK 75


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 303 PSSKEVSILLVHNNYIFFQLADK 371
           P S+E    L +NNYIFF++  K
Sbjct: 533 PCSREEDTKLDYNNYIFFKVPHK 555


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 633 KQLKCSFLNPLIRISSQSLTQNYVFRKNKYLLYNC 737
           + L+ S LN L+R+S     +  +F + KY+ + C
Sbjct: 300 RDLRQSHLNCLVRVSGVVTRRTGLFPQLKYIRFTC 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,267
Number of Sequences: 5004
Number of extensions: 50943
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)