Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A08
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    31   0.70 
AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF039713-3|AAM81096.1|   56|Caenorhabditis elegans Hypothetical ...    30   1.6  

>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -2

Query: 242 SISVY-IPLWKKRMKKSFPTICC 177
           ++++Y IP WKKR K +FP+I C
Sbjct: 301 TVAMYSIPAWKKRYKNAFPSIFC 323


>AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical
           protein C04E12.10 protein.
          Length = 658

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 122 SGRVLASKPSVCDRKDWETFSLXXTWPRPSSTTXVSTMIN 3
           S  +   K  V DRK  ETFS+   W   + TT  +T ++
Sbjct: 400 SDNIRLFKTDVNDRKSVETFSIEVFWQNTTETTLATTAVS 439


>AF039713-3|AAM81096.1|   56|Caenorhabditis elegans Hypothetical
           protein F57B10.14 protein.
          Length = 56

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 278 SFSETVLFTSWSSISVYIPLWKKR 207
           +F   + F  W ++  YIPLW KR
Sbjct: 30  AFLLAIYFCEWKTVGQYIPLWNKR 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,016
Number of Sequences: 27780
Number of extensions: 277568
Number of successful extensions: 478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)