Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A08
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 624 FLIHRLKLNPKQIGIEFTKVRYENYRHN 541
           FL   L+L+PK I +   +V  +NY H+
Sbjct: 33  FLSTILRLDPKFIALHCQEVGGKNYEHS 60


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 326 LIGTQQLHFFSISR*VIVFTFKPI 397
           L+G +  HFF + R +I F F  I
Sbjct: 238 LVGKKITHFFDLVRPLIAFKFHSI 261


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 114 STASSRERRX*VLGXKVISRRAANRREALLHSLLPQRNVNRN*APRGEENS 266
           STA +R R   V   ++  ++  +R  A++H L   + +     P+  E+S
Sbjct: 312 STAQARVRMQVVSQLEIQLQKERDRLTAMMHHLHVAKQMASPEPPKSSESS 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,851
Number of Sequences: 438
Number of extensions: 3931
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)