Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A07
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    65   1e-11
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    30   0.35 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   1.4  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    28   1.9  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   7.6  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   7.6  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 3/184 (1%)
 Frame = +2

Query: 263 NEYITTRENNGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFS 442
           N+ +     NG R  TLN  K  N+++++M++ ++  +   +E    + II+   G  FS
Sbjct: 55  NDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFS 114

Query: 443 AGHNLK--ELQSSSG-VDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATC 613
           +G ++K   L    G + + +  F++   L  ++     PV+A +NG     G  L    
Sbjct: 115 SGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHV 174

Query: 614 DIIVCSDSSKFSTPGANFGIFCSTPGIALGRSVCKSKATYMLFTGEPINAQEAYESGLVT 793
              +  + + F+ P    G F           +     TY+  T + +   +   +G+ T
Sbjct: 175 PFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIAT 234

Query: 794 KVVP 805
             VP
Sbjct: 235 HFVP 238


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 209 FVQKXGSRSLSVLRRFVHNEYITTRENNGTREITLNHEKTKNSLSLNMM 355
           F+Q      +  LR  VH+++I +R  N        HE  K  + L +M
Sbjct: 405 FLQSLSQEEIDDLRAMVHSDHIYSRLTNSLAPSVYGHEIIKKGILLQLM 453


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
 Frame = +2

Query: 392 DISLRAIIISAKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMK-----SIILSPVPV 556
           D  L   ++SA  +  +A +N ++ +     DQ    F  AT L K     S++ S +  
Sbjct: 271 DALLSNQLLSADKHQLAASNNSQDFEDGKQYDQPPPSF--ATRLAKQSDPNSLLQSEIQH 328

Query: 557 IAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIALGRSV 712
           +A +    TA    LV    I      S  ++PG+NF     +P +A+ R +
Sbjct: 329 LASIESI-TAQAAPLVT---IHPFKSPSLSASPGSNFDNMSISPKVAVNRYI 376


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 542 SPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGA 661
           S + V  +V  F+TA    L+A+ D +    SS    PG+
Sbjct: 5   SSITVTVRVRPFSTAESANLIASSDRLSFGTSSSLRNPGS 44


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 60  LNWTETRFLERNLNLSXGRP 1
           L W+E  F +R L++S GRP
Sbjct: 366 LIWSELLFFDRMLSMSLGRP 385


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 362 LIEAINKNKEDISLRAIIISAKGNVFSAGHNLKEL 466
           L + +++ +ED SL  I  S K NVFS   N+ ++
Sbjct: 40  LPDRVHERREDWSLFFIHFSKKSNVFSLFSNVDDI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,798
Number of Sequences: 5004
Number of extensions: 59065
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)