Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A05
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    29   0.86 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   2.0  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   6.1  

>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 405 KNLEKSSRNL-KLEINLEDVRKEWLKTTGPFHKKQIADHYGVFEHLYGEGYFLPHLNIDV 581
           K LE  +  L +L  +L  +R  WL  +G FH + +       ++  GE  F  +++ ++
Sbjct: 179 KELESITSTLSELVRSLGKLRSNWLDVSGAFHSRYMLPARDSLKNALGETEF--NISPEL 236

Query: 582 LYNLKDGTFLPV 617
            Y      FLP+
Sbjct: 237 CYTDSGKRFLPI 248


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 291 NYKDELYTSRIDIGFPPIKQSKEVRDHRLQHLRKIKSDKNLEKSSRNLKLE 443
           ++ ++LYTSRID   P  K+ ++  D   + +    ++       R LK++
Sbjct: 161 HFDEDLYTSRIDRSHPKYKEKEQEADRIAKEIEGTVTNNIHIAEERGLKVD 211


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = -1

Query: 335 EANVDSTCVQFIFVIKFLDTLFQGPRIYRRITSYSVPRPYLLKLNSSYTG 186
           E+ +D  C +F   +  +D + + P  Y+R+          + L++ Y G
Sbjct: 14  ESQIDGVCPKFYVNVDDIDIIHEPPEFYQRLKKLIKKAQKRIFLSTLYIG 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,550
Number of Sequences: 5004
Number of extensions: 71104
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)