Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A05
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    27   0.17 
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        27   0.17 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    26   0.52 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.52 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   4.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 539 KMFKYAIMVCNLFFMKWTCSFQPFFSDIFQV 447
           K+ K A+M  +L+FM WT      FS IF +
Sbjct: 275 KLAKVALMTISLWFMAWTPYLVINFSGIFNL 305


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 539 KMFKYAIMVCNLFFMKWTCSFQPFFSDIFQV 447
           K+ K A+M  +L+FM WT      FS IF +
Sbjct: 25  KLAKVALMTISLWFMAWTPYLVINFSGIFNL 55


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 641 RLNYISCTNRQKCAILQIVQN 579
           ++ Y  CT  Q+C+IL+I +N
Sbjct: 49  KIQYRPCTKNQQCSILRINRN 69


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 641 RLNYISCTNRQKCAILQIVQN 579
           ++ Y  CT  Q+C+IL+I +N
Sbjct: 98  KIQYRPCTKNQQCSILRINRN 118


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 609 LPVCAGNVIKPTEALEAPIITYDSDDSALWTLA 707
           LP C  NVI P     +P+++    D+ L  LA
Sbjct: 45  LPFCGPNVINPFFCDMSPLLSLVCADTRLNKLA 77


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 294 YKDELYTSRIDIGFP 338
           Y D  YT+ ID  FP
Sbjct: 378 YMDSGYTNEIDFSFP 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,846
Number of Sequences: 438
Number of extensions: 4973
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)