Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A04
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    27   0.26 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 405 MPFDDLHLYSFVFIFHIHMINLKFGLMLYSSVEYILQLHLKA 530
           +PF+ + + + +  +   +    F LML S + Y+ +LH+ A
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDA 337


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 149 SRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTDP 256
           S S S + +++I P +     H++S   +S    DP
Sbjct: 46  SSSNSDSLSMTIPPSIDRSSIHEESYLAESSRSIDP 81


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 426 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSN 325
           S ++R  + N  Y +NY    Y   C++   + N
Sbjct: 84  SLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 185 VPRVGHDQNHDQSQHEDSH 241
           +PR+ HD       HED +
Sbjct: 510 LPRIHHDAEWKVGNHEDGY 528


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 185 VPRVGHDQNHDQSQHEDSH 241
           +PR+ HD       HED +
Sbjct: 425 LPRIHHDAEWKVGNHEDGY 443


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 185 VPRVGHDQNHDQSQHEDSH 241
           +PR+ HD       HED +
Sbjct: 744 LPRIHHDAEWKVGNHEDGY 762


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 312 MNSDHYCPNCNAYIGTYTR*FH 377
           M   HYC   N Y    T  FH
Sbjct: 6   MAGQHYCLRWNNYQSNMTSVFH 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,817
Number of Sequences: 438
Number of extensions: 4693
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)