Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A03
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    42   7e-05
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   4.8  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 1/150 (0%)
 Frame = +2

Query: 239 GLLFIPYRFGLIPNR-HFII*NFISKKLHNEFKTLLKNNYFNGSTXXXXXXXXXXXXXXX 415
           G   +P +FG+     +F + N +  ++H+  KT+   +YF                   
Sbjct: 55  GAKIVPQKFGIAMEAIYFTMLNLVENQIHSS-KTVSGQSYF----PFIWSLFVLILFSNL 109

Query: 416 XXXXPYIFTRTRHXXXXXXXXXXXXXXXXXYG*IKNTNHIFIHIIPXGTPYILIPFXXXX 595
               PY +  T                    G  ++   +F   +P GTP  LIP     
Sbjct: 110 LRLIPYGYATTAQLIFTLGLSISILIGATILGLQQHKAKVFGLFLPSGTPTPLIPLLVLI 169

Query: 596 XXXXXXXRPGTLAVRLTANIIAGHLLITLL 685
                  R  +L +RL ANIIAGHL +++L
Sbjct: 170 EFVSYIARGLSLGIRLGANIIAGHLTMSIL 199


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 273  INPNLYGINNNPXIVLIXFIGKFIKFVDGSKIENKFVIIXN*KXIFFFWLQFINKMYFFF 94
            +N   Y INN     +  F+  F   + G++   K  +I N   ++FFWL F+     FF
Sbjct: 1065 LNDVEYYINN-----VFLFLLSFYSLIYGAE---KPYLIHNVVGLYFFWLLFLYAKNGFF 1116

Query: 93   INEV 82
            +  +
Sbjct: 1117 VQNI 1120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,847
Number of Sequences: 5004
Number of extensions: 29433
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)