Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_P24
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736... 176 2e-44
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 171 7e-43
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 39 0.005
06_03_0178 + 17594062-17595576 30 2.5
01_01_0357 - 2816650-2817897 29 4.4
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 29 5.8
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 29 5.8
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 5.8
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 28 7.6
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357 28 7.6
>07_03_0796 +
21572131-21572204,21573427-21573482,21573580-21573671,
21574103-21574205,21574297-21574434,21574654-21574907
Length = 238
Score = 176 bits (428), Expect = 2e-44
Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 13/225 (5%)
Frame = -3
Query: 680 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDM 504
G++ Q + D C+LVDE+DN +G +K CH + + + LLHRAFSVFLFN + ++
Sbjct: 12 GMDEVQKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYEL 71
Query: 503 FLQRRSSQKVTYPDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDP 339
LQ+RS+ KVT+P +TN CCSHPLY I E + AA+R++ ELGIP + +
Sbjct: 72 LLQQRSATKVTFPLVWTNTCCSHPLYRESELIQENYLGVRNAAQRKLLDELGIPAEDVPV 131
Query: 338 ELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPT 159
+ FT + R+ Y P DG WGEHE+D++LF DVKV PN DE+++ +V + + +
Sbjct: 132 DQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVVPNPDEVADVKYVSREQLKELIRK 191
Query: 158 LEG-----PITPWFNMIRRHRLKLWWDNLHR--IKELAEPEKIQK 45
+ ++PWF ++ + L WWD++ + + E + E I K
Sbjct: 192 ADAGEEGLKLSPWFRLVVDNFLMGWWDHVEKGTLNEAVDMETIHK 236
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 171 bits (415), Expect = 7e-43
Identities = 88/225 (39%), Positives = 138/225 (61%), Gaps = 13/225 (5%)
Frame = -3
Query: 680 GLELAQAEALDKDICLLVDEKDNFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDM 504
G++ Q + +D C+LVDE+DN IG +K CH + + +LHRAFSVFLFN + ++
Sbjct: 68 GMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYEL 127
Query: 503 FLQRRSSQKVTYPDYYTNACCSHPLY-----IDEKPEEIITAARRRMNHELGIPLDQLDP 339
LQ+RS+ KVT+P +TN CCSHPLY I++K + AA+R++ ELGI ++L
Sbjct: 128 LLQQRSATKVTFPLVWTNTCCSHPLYRESELIEDKSLGVRNAAQRKLFDELGIQAEELPV 187
Query: 338 ELFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPT 159
+ F + R+ Y P DG WGEHE+D++LF DV++ PN +E+++ +V + E L
Sbjct: 188 DQFIPLGRMLYKAPSDGKWGEHELDYLLFMVRDVELSPNPEEVADVKYVNRDELKELLKK 247
Query: 158 L---EGPI--TPWFNMIRRHRLKLWWDNLHR--IKELAEPEKIQK 45
EG I +PWF ++ + L WWD++ + ++E + + I K
Sbjct: 248 ADAGEGGIKLSPWFRLVVDNFLMRWWDHVEQGTLEEAIDMKTIHK 292
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = -3
Query: 590 RECHKVGPDGDVLLHRAFSVFLFNKR-GDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEK 414
R +V DGD HRA V+++++ G++ LQRR+ K T+P + + H D
Sbjct: 47 RIASEVHRDGDY--HRAVHVWIYSESTGELLLQRRADCKDTWPGQWDISSAGHISAGDSS 104
Query: 413 PEEIITAARRRMNHELGIPLDQLDPE-LFTFM 321
+++A+R ++ ELGI L E LF F+
Sbjct: 105 ----LSSAQRELDEELGIKLPSDAFELLFVFL 132
>06_03_0178 + 17594062-17595576
Length = 504
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 168 PSNLGGSDNAVVQHDPPPPIETLVGQLAPHQRARRTGENTKI 43
P GGSD A + PPPP + L AR+ E TK+
Sbjct: 382 PGGSGGSDRAHFK-IPPPPARDVKAHLLSRDAARKIKERTKM 422
>01_01_0357 - 2816650-2817897
Length = 415
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 164 PTLEGPITPWFNMIRRHRLK 105
P EGP+ PWF +RRH+L+
Sbjct: 130 PASEGPLQPWF--LRRHQLR 147
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 535 LNALWSSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSLS 690
L++L S S SG L HSL ++ P LS + ++ A++ A SRP+++
Sbjct: 116 LSSLLHSLSVSGRLLPHSLLLSFPPSLSDPPSPLLLNSLLAASAAASRPAVA 167
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 407 PRASHLCTVDGCSKHLCSNR 466
P A+ LC VDGC H C R
Sbjct: 140 PLAAVLCAVDGCGHHDCHGR 159
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 653 LDKDICLLVDEKDNF--IGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQ 495
+D D LL ++ + +G C +G + D+L FS F+ K G MFL+
Sbjct: 862 VDADRSLLTQREEQYARVGGVAVEFCVHIGRN-DILFDTVFSKFVAAKSGGMFLE 915
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 350 QLDPELFTFMTRVHYHDP---GDGVWGEHEIDHILFFQSDV 237
QL P FT TRV P + WGE EI L+F SDV
Sbjct: 131 QLHPS-FTNPTRVVEQPPFELSESGWGEFEIAITLYFHSDV 170
>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
Length = 375
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 755 LWSTLRVEKRFLASEPV-KPXTXDKDGL-ELAQAEALDKDICLLVDEKDNFIGTATKREC 582
+W T E F+AS P D+ E A A+ D D C ++ F A
Sbjct: 271 IWPTSAPEAAFVASAAGHSPSAADESVADEAAAAQMADMDYCFGQYDQSTFGAAAAADHR 330
Query: 581 HKVGPDGDV 555
+G DGDV
Sbjct: 331 VLIGDDGDV 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,673,078
Number of Sequences: 37544
Number of extensions: 531014
Number of successful extensions: 1555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -