Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P23
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   3.3  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.8  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 515 IYLLKISGKISVIPLNVGFIKHNVFF*RIFKQKSRVVEILCYKKI 381
           +Y LKI+ K S I  N+  +K + F   +FK     +++ C++ I
Sbjct: 301 LYALKIA-KDSKIIKNLDLVKEHAFVKTLFKHPDIKIQLACFRLI 344


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 170  SEVWETKTFKHILNKNISY--LSLRNNKSITL*IKIVLQSRAI 292
            +E+WE + +  +   NISY  LSL  ++++ L +   L S+ +
Sbjct: 924  AEIWENQVYDTLSKSNISYDKLSLLRDEAMNLCVNKELFSKVV 966


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 369 KIPQNLLITQYFYNTRFLFKNSLKKY 446
           K+PQ  L T   Y  RF  + SLK Y
Sbjct: 59  KLPQTALATANIYFHRFYLRFSLKNY 84


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 536 EMIHSDKLLFFLVL--YNTIFHN 598
           +M+H DK++FFL L   +TI HN
Sbjct: 203 DMLHRDKIVFFLHLLGIDTIGHN 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,501
Number of Sequences: 5004
Number of extensions: 52745
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)