Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P23
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine re...    29   2.3  
AC006801-1|AAF60752.2|  501|Caenorhabditis elegans Hypothetical ...    29   2.3  
U49830-12|AAL16311.1|  363|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine
           receptor, class i protein30 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 584 CYIRLKRIVICLNESSQLCPYVFIYLLKISGKISV 480
           C+ R  + ++ L +S+   PY FIY+L +S  +++
Sbjct: 113 CFFRKHQAIMKLKQSTDRLPYPFIYVLCMSYSVAI 147


>AC006801-1|AAF60752.2|  501|Caenorhabditis elegans Hypothetical
           protein Y52D5A.2 protein.
          Length = 501

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 381 FGEFFPSVLKWNR-VVKYRVITELPVKCIVIIALDWRTIFIHKVID 247
           FG     +L+W+R  +  R ITE P+K  + I+++W+    H  +D
Sbjct: 41  FGSEVEKILQWDRSYLVRRAITE-PMKKFLCISVNWKNKVFHYQLD 85


>U49830-12|AAL16311.1|  363|Caenorhabditis elegans Hypothetical
           protein C33F10.13 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 167 SSEVWETKTFKHILNKNISYLSLRNNKSIT 256
           SS   + + FK I++KN+SYLSL ++  +T
Sbjct: 207 SSYFSKLEKFKEIVSKNLSYLSLEDSIPLT 236


>AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical
           protein C29G2.4 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
 Frame = -2

Query: 591 KIVL-YKTKKNSNLSE*IISTM--PVCIYLPIKNKR*NFGYSLKCWVHKA*CIFLKNF*T 421
           KI L Y T  N+ LS  + + M   +C YL  K     FGYS   W++K+    +     
Sbjct: 195 KIYLNYTTVVNNTLSTVLTTGMYFHLCYYLIFK-----FGYSTSMWLYKSKRQIIAQGII 249

Query: 420 KISCCRNTVL*EDFGEFFPSVLKWNRVVKYRVITELPVKCIVIIALDWRTIFIHKVIDLL 241
                 +T +  ++ +FFP+   W  ++   +  +    C+ I+ L       + V+ ++
Sbjct: 250 LTFFHASTSIIYEYVQFFPA--PWWLILIAHISWQFSSGCLGIVYLTLNRTIRNSVVKMI 307

Query: 240 F 238
           F
Sbjct: 308 F 308


>Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical
           protein C40C9.2 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 245 CCFLTISKIYFYSICA*MFSSP 180
           CC +T S     S C  MFSSP
Sbjct: 509 CCLITFSVFIVVSTCGIMFSSP 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,610
Number of Sequences: 27780
Number of extensions: 289108
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)