Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_P23
(679 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 26 0.38
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 25 0.88
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 23 2.0
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 2.7
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 2.7
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 23 3.5
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 3.5
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 8.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 8.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.2
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.8 bits (54), Expect = 0.38
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 405 RNTVL*EDFGEFFPSVLKWN--RVVKYRVITELPVKCIVIIALDWRTIFIHK 256
RN GEF + +N R Y +I ++ V C++I+ L W + +IH+
Sbjct: 220 RNLTFVRREGEFSVLQVSFNLQRHTGYFLI-QVYVPCVLIVVLSWVSFWIHR 270
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 24.6 bits (51), Expect = 0.88
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 289 NNDNAFNR*LCYNTIFYNAVP 351
NNDN +N+ L YN + +P
Sbjct: 97 NNDNNYNKKLYYNINYIEQIP 117
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 357 TRKEKIPQNLLITQYFYNTRFLFKNSLK 440
TRKE IPQNL + N +F N +K
Sbjct: 462 TRKEYIPQNLGVIG-TSNLSLVFPNDIK 488
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 521 HTGIVEMIHSDKLLFFLVLY 580
HT ++ +H K +F L+LY
Sbjct: 26 HTADMDFLHKQKKIFDLLLY 45
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 521 HTGIVEMIHSDKLLFFLVLY 580
HT ++ +H K +F L+LY
Sbjct: 26 HTADMDFLHKQKKIFDLLLY 45
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 289 NNDNAFNR*LCYNTIFYNAVP 351
NN+N +N+ L YN + +P
Sbjct: 97 NNNNNYNKKLYYNINYIEQIP 117
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 289 NNDNAFNR*LCYNTIFYNAVP 351
NN+N +N+ L YN + +P
Sbjct: 335 NNNNNYNKKLYYNINYIEQIP 355
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 286 SNNDNAFNR*LCYNTIFYNAVP 351
+NN N +N+ L YN + +P
Sbjct: 98 NNNYNNYNKKLYYNINYIEQIP 119
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 610 YKYIYRVIERLLVYI 654
+KY+ VI+RL +YI
Sbjct: 471 WKYVAMVIDRLQLYI 485
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +2
Query: 299 MHLTGSSVITRYFTTRFHFNTEGKNSPKSSYNTVFLQ 409
M + SSV+ FH T + S +FLQ
Sbjct: 333 MFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQ 369
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +2
Query: 299 MHLTGSSVITRYFTTRFHFNTEGKNSPKSSYNTVFLQ 409
M + SSV+ FH T + S +FLQ
Sbjct: 333 MFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQ 369
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,988
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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