Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P22
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    28   1.2  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.7  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    22   5.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   6.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.4  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    25   8.4  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 558 KAAPRFKGGFSNDYILRLNLICSLQSGCTRTRRWINC 668
           +A+ RF+   ++D +  LN IC L+  C R    I+C
Sbjct: 828 EASSRFRFNLTDDLLHSLNPICILRGTCLRLGIQISC 864


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 605 QNVIVREPAFKTRRRLSCLCMKLINAAPGIADDHERLAEGNEKDYSAHEEDV 450
           QN + R   ++TR + + L   L+N+  G    H    E  E+D S   E+V
Sbjct: 357 QNQLYRTILYETRNKKT-LVQNLLNSLEGKLQAHLEKFEQTERDISEKNEEV 407


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 570 RFKGGFSNDYILRLNLICSLQSGCTRTRRWINCILTF-NVLN*SIPLMD 713
           R + GF  D +  LN+I +++ G +   R +  ++TF N L    P +D
Sbjct: 28  RTQEGFETDILRALNIILTVKKGNSNADRVLRFLVTFVNYLQQKDPEID 76


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.2 bits (45), Expect(2) = 5.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 125 PPPYPPAVRRGSA 163
           PPP PPAV  G +
Sbjct: 778 PPPPPPAVSAGGS 790



 Score = 21.8 bits (44), Expect(2) = 5.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 122 SPPPYPPAV 148
           SPPP PPAV
Sbjct: 731 SPPPPPPAV 739


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 432 SLPLVILPQDTNNSSTHCRVVRLS 361
           ++PLV+   D N+ ST  ++VRLS
Sbjct: 551 NIPLVVCDLDKNSVSTFGKIVRLS 574


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 515 ADDHERLAEGNEKDYSAHEEDVALNS 438
           AD+ E   E  E+D  A +EDV L +
Sbjct: 237 ADEEEEAVEAMEEDEVAEDEDVVLET 262


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 393 NYSCPAGE*LKVGTHRVQC 449
           NY+ P G  +KVG+ R +C
Sbjct: 239 NYTLPDGRVIKVGSERYEC 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,769
Number of Sequences: 5004
Number of extensions: 48569
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)