Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P22
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0413 + 17372852-17373787                                         29   2.9  
01_01_0188 - 1631006-1631017,1631171-1631307,1631934-1632033           29   5.0  
08_02_1483 - 27451391-27451794,27451883-27452387                       28   8.7  
08_02_1255 + 25636634-25636956,25637462-25637894                       28   8.7  

>09_04_0413 + 17372852-17373787
          Length = 311

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 623 LASVRLYTDSAMDKLHFNIQCPELIDSTNGPT 718
           L S+R+Y    MD+LH  +  P  +D+  G T
Sbjct: 13  LDSLRIYRSGKMDRLHHPVLAPAGVDAATGVT 44


>01_01_0188 - 1631006-1631017,1631171-1631307,1631934-1632033
          Length = 82

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 372 LHDNEWMNYSCPAGE*LKVGTHRVQCYVLLVC 467
           LHD     + CPA   LK+  H +  ++LL+C
Sbjct: 28  LHDRSRGIWPCPASAILKIYFHALGLFLLLIC 59


>08_02_1483 - 27451391-27451794,27451883-27452387
          Length = 302

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 181 SLTRYRGGP--PPHSRGVRGGGPASVQAASMIS 89
           ++ R+   P  PP SRG RGGGP        IS
Sbjct: 61  NIIRFADDPAAPPSSRGGRGGGPGGSGGGGTIS 93


>08_02_1255 + 25636634-25636956,25637462-25637894
          Length = 251

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 608 PQNVIVREPAFKTRRRLSCLCMKLINAAPGIADDHERLAEGNEKDYSAHEE 456
           P N   R  A  +RRR SC  +      P +A DH  + E +E+D S  E+
Sbjct: 143 PFNKRRRVLAAWSRRRASCSSLATTYLPPLLAPDHAVVEEEDEEDDSDAEQ 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,194,496
Number of Sequences: 37544
Number of extensions: 438534
Number of successful extensions: 1954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)