Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P21
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    29   0.51 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   4.8  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   8.4  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    25   8.4  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 256 NSQRSQCDTTSKTNTHQLYRQDKLRW 333
           NSQR++  TT+ TN  +LY QD   W
Sbjct: 20  NSQRTEFVTTTATNQVELYEQDGNGW 45


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 627 STAKIATEKTALRWYNASFLTLISLCTPLVG 719
           S +K+  E    RWY+ S+   +++C  ++G
Sbjct: 798 SESKLGLETLFNRWYSESWANYLTICGAVIG 828


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +3

Query: 567 ARTHSAEPSSIHWARTSPTASTAKIATEKTALRWYNASFLTLI 695
           A  H A  +S  W R      T+ ++  +   RW++ +F  ++
Sbjct: 610 ATVHLATCASHDWKRVDRLMMTSYVSLNQAQRRWFSKAFAKVV 652


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 282 CIALRSLRILYLYWNVRSGVSNLELHRYHWIKDV 181
           C      R +Y+ W++R+G++   L   +W K++
Sbjct: 219 CEQASRFRRVYIPWSIRNGLNAKTLINVYWEKEL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,270
Number of Sequences: 5004
Number of extensions: 54691
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)