Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_P20
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 140 2e-34
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.11
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 29 0.57
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 3.0
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 26 4.0
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 5.3
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 25 7.0
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 25 7.0
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 140 bits (338), Expect = 2e-34
Identities = 74/175 (42%), Positives = 106/175 (60%)
Frame = -3
Query: 627 LAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAIDDDSNQTAQMT 448
LA G RA + V E L+P+ VAK+L + EK++LV++GKQAIDDD++QT M
Sbjct: 81 LAKGIGRAALINVGEKE---LEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGML 137
Query: 447 AALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSADLRLNEPRYATLPNI 268
AA+L WPQ T ASK+ + +TREIDGG E + + +PA+++ DLRLN PR+A L +
Sbjct: 138 AAMLGWPQFTSASKVRIEGDKVIVTREIDGGEETLSSTLPAIITTDLRLNVPRFANLAKV 197
Query: 267 MXXXXXXXXXXXXKDLGVDLAPRIKVVSVEDPPVRQAGSIIPDVDTXVAKLKEGG 103
M +DLGV + R++ VSV +P ++ ++ VD V LKE G
Sbjct: 198 MKARKAPLGKMSPEDLGVTIDQRLQTVSVSEPVQKRQNIMVKSVDEMVKTLKELG 252
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.11
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 5/192 (2%)
Frame = +2
Query: 65 SXSIXSSXXAXTCPPSLSLATXVSTSGMMEPACLTGGSSTETTLIRGARSTPRSLALTFL 244
S SI SS A + S SLA+ + S + SS+ ++ +T SLA + L
Sbjct: 141 SSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSL 200
Query: 245 RGFFFAFMMLGSVAYRGSFSRKSALSTAGIFVLITSKPPSISRVIVRAPSVFSIFDANVP 424
+ A S S +A ++A L +S S + + S+ S ++ P
Sbjct: 201 NS------TTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTP 254
Query: 425 CGQSNKAAVICAVWLESSS-----MACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPA 589
SN + SSS + LP+ T S+ + S + AT S +
Sbjct: 255 LTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSS-TPLSSANSTTATSASSTPLTSVNS 313
Query: 590 TST*IARSAPIA 625
T+T A S P++
Sbjct: 314 TTTTSASSTPLS 325
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 393 QSFL-SLMQMCLVANLIKQQSSVLSGWSHHL 482
Q FL SL C++ IK S++ W+HHL
Sbjct: 73 QIFLFSLFGSCMLFRFIKYPSTIKDSWNHHL 103
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 473 SSSMACLPTITKSAFSSCDSFANIFAT*MGCNVSYSAPATST*IARSAPIARAV 634
SSS + PTIT+S+ S+ S + N SYS+P +S + S I ++
Sbjct: 781 SSSSSATPTITQSSISTSVSSQS------SMNSSYSSPISSNSVTSSTSIISSI 828
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 359 PSISRVIVRAPSVFSIFDANVPCGQS 436
PS+S V RAP FS +ANVP G++
Sbjct: 285 PSMSYVY-RAPESFSSINANVPYGRN 309
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 178 FHRDHLDTRCQVHPKVFSTYFFERLL 255
FH DH+ R ++P V Y +LL
Sbjct: 312 FHSDHMRIRYALYPNVAMKYILRKLL 337
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 344 ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 454
ITS P+ S++ VR + S FD ++P G S A I
Sbjct: 143 ITSSTPTPSQLPVRPSTSLSFFD-DIPLGPSFSAETI 178
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 413 ANVPCGQSNKAAVICAVWLES--SSMACL 493
A+ PCG+ KAA C V+ +S M CL
Sbjct: 206 AHGPCGEEFKAAFSCFVYSKSEPKGMECL 234
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 206 HLVSRWSLWKILQSDRLAPSYLMST 132
+ VS+W+ + QSD APSY T
Sbjct: 749 NFVSKWANVSVRQSDFDAPSYFQGT 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,855
Number of Sequences: 5004
Number of extensions: 47091
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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