Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P16
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   7.2  
U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 818 VPIYCMLERL-YFIGLYKQSYITCRQIIVSFNFHCVLLCTEAV 693
           V +YC+L++  + +  YK   +  +  I+SFN    +LCT  V
Sbjct: 33  VSVYCILKKSPWNMVFYKWLILVFQLAIISFNVLLTILCTPVV 75


>U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical
           protein C44B7.4 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 364 FTALKLIALNKFAKTIFFVR*LWQEQKGLEMD*PD 260
           F  L+LIA  K  +T++    LW + KG  +  PD
Sbjct: 281 FARLRLIAAEKTQQTMYTPLQLWNDNKGYRIPQPD 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,320
Number of Sequences: 27780
Number of extensions: 292974
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)