Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P15
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    26   6.6  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    26   6.6  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    26   6.6  
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa...    26   6.6  
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos...    26   6.6  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    26   6.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.7  

>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 701 DIIFSRVINQRRHKMRRPKSHSHSNTLKRAREATMAK*NKLKTF 570
           D+     +N++  + R+ +    +NT+K  ++    K NK+K F
Sbjct: 35  DLCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEF 78


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 701 DIIFSRVINQRRHKMRRPKSHSHSNTLKRAREATMAK*NKLKTF 570
           D+     +N++  + R+ +    +NT+K  ++    K NK+K F
Sbjct: 35  DLCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEF 78


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 701 DIIFSRVINQRRHKMRRPKSHSHSNTLKRAREATMAK*NKLKTF 570
           D+     +N++  + R+ +    +NT+K  ++    K NK+K F
Sbjct: 35  DLCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEF 78


>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
           family 9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 701 DIIFSRVINQRRHKMRRPKSHSHSNTLKRAREATMAK*NKLKTF 570
           D+     +N++  + R+ +    +NT+K  ++    K NK+K F
Sbjct: 35  DLCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEF 78


>SPBC1348.01 |||S. pombe specific DUF999 protein family
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 701 DIIFSRVINQRRHKMRRPKSHSHSNTLKRAREATMAK*NKLKTF 570
           D+     +N++  + R+ +    +NT+K  ++    K NK+K F
Sbjct: 35  DLCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEF 78


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 701 DIIFSRVINQRRHKMRRPKSHSHSNTLKRAREATMAK*NKLKTF 570
           D+     +N++  + R+ +    +NT+K  ++    K NK+K F
Sbjct: 35  DLCKPEKVNKQSQRSRQSRQSLFTNTIKPQKDKMNIKTNKIKEF 78


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 380 RDLNNINDFSNLSQX---LTLLNKNEWHFWFVHCT 475
           +D ++I + SN+S+    +   N+N+ H W   CT
Sbjct: 625 QDFDSITNASNVSKSEVWVLYANRNDTHLWSYDCT 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,112
Number of Sequences: 5004
Number of extensions: 49946
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)