Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P15
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0193 + 18939869-18939988,18940714-18941012,18941078-189411...    29   3.9  
01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299...    28   9.1  

>05_04_0193 +
           18939869-18939988,18940714-18941012,18941078-18941186,
           18941874-18941999,18942178-18942218,18942614-18942744,
           18943218-18943291,18944215-18944450,18944543-18944863,
           18945023-18945086
          Length = 506

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 572 KFLIYFISPLSLLWPSLMYLNDYVTWVF 655
           K    F +P S  WP ++YL DYV + F
Sbjct: 310 KIFAAFGTPKSSQWPDMVYLPDYVEYQF 337


>01_06_1597 +
           38528241-38528588,38529623-38529721,38529814-38529927,
           38530349-38530420,38530520-38530630,38530738-38530857,
           38531541-38531613,38531997-38532077,38532167-38532231,
           38532383-38532484,38532571-38532744,38532873-38532938
          Length = 474

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 46  KKLNQLMQASXGNLCXX*FVXHFPALKHLVNFSFATFEIKHIFNGSYKNETCINKLKIK 222
           K++N       GN C   F+ H      +V+ S+ TF+ K    G   +E+ +N  K +
Sbjct: 410 KQMNSRRSDPYGNPCNMDFMAHIAESCKIVSSSYGTFKKKAREQGWIMSESLLNPGKAR 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,904,340
Number of Sequences: 37544
Number of extensions: 251246
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)