Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_P14
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 36 0.004
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 36 0.006
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 30 0.21
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.37
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.65
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 1.5
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 1.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 3.5
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 26 3.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 4.6
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 4.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 4.6
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 6.1
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 8.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 8.1
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 35.9 bits (79), Expect = 0.004
Identities = 26/94 (27%), Positives = 48/94 (51%)
Frame = -2
Query: 490 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 311
++ K + ++ +G+ S V+ +E + V T + + Y LTD S+E ENK L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501
Query: 310 LVINKLLEPINVADSHWKQKTDKVVIFLAKSNPN 209
L+I+ + +++ S +K K ++ F KS N
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNKSFQN 3535
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.006
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Frame = -2
Query: 478 YQVKLNV--YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLV 305
+QVKL Y WDQ+ V + + + QV +++ +++ ++ E K +L+
Sbjct: 2 HQVKLEEAEYEWDQTIADVDIVIHVPKGTRAKSLQV--DMSNHDLKIQINVPERK--VLL 57
Query: 304 INKLLEPINVADSHWK-QKTDKVVIFLAKSNPNTTWS 197
L + IN+ +S W ++ +++VI L KSN WS
Sbjct: 58 SGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWS 94
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 30.3 bits (65), Expect = 0.21
Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Frame = -2
Query: 391 PKEQVYCKLTDKSMELHVDNLENKDYLLVIN----KLLEPINVADSHWKQKTDKVVIFLA 224
PK+ +C+L + + H++ L++K + L+ + + L +N +++
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLIYDTFRTEKLVALNATPGSQFISAEEMNQKYI 390
Query: 223 KSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQXAXMRRMKXMXETGDDEMKRMSA 44
+T++ K+ ++ N L+ ET+ K +K ++E R+
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450
Query: 43 QAGEE 29
+ G E
Sbjct: 451 EIGPE 455
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.5 bits (63), Expect = 0.37
Identities = 28/136 (20%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = -2
Query: 541 LTPMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV--ELKNVHTLPKEQVYCK 368
L+P ++S +P++ +P ++ +++ + +DQ+ F+ + +V E++ K
Sbjct: 1406 LSPSKISNLPSSQPGSPSKRSGKMEALIRNFDQNSSIPDPFIVNQRNSVLQTEFEKINLK 1465
Query: 367 LTDKSMELHVDNLENKDYLLVINKLL---EPINVADSHWKQKTDKVVIF--LAKSNPNTT 203
L + + +DN + + +I LL E + + DK++ F L + PN T
Sbjct: 1466 LKEATKSGILDNKDLSKFSELIQSLLKENEELKNLTTSNLGSDDKMLDFAPLLEDVPNNT 1525
Query: 202 WSHMTE-IEKKFEDQR 158
+ + +EK +R
Sbjct: 1526 RNQIKGFVEKAISSKR 1541
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 28.7 bits (61), Expect = 0.65
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 211 NTTWSHMTEIEKKFEDQRNNRLKPAETDKKDPQ 113
NT W M +E++ + R + LKP D+K+ +
Sbjct: 350 NTIWREMMAMERRTQAARLSGLKPVAADEKESE 382
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 322 KDYLLVINKLLEPINVADSHWKQ 254
++YLL+ + P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 289 EPINVADSHWKQKTDKVVIFLAKSNPNTTW-SHM-TEIEKKFEDQRNNRLKPAETDKKD 119
EPI+ + ++ L+K P W SHM ++ +K+ E+ +L+ A+ D D
Sbjct: 202 EPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQIDWND 260
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 556 KXKETLTPMEVSPIPTTSTSAPVQKKYQVKLN 461
K +++ TP V P+T+TSAP + +N
Sbjct: 343 KSQDSATPANVETTPSTATSAPKKSTAPFAIN 374
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 547 ETLTPMEVSPIPTTSTSAPVQKKY 476
++LTP E+ +P T T+ +++KY
Sbjct: 29 KSLTPYEILELPRTCTANDIKRKY 52
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 4.6
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -2
Query: 490 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 311
+QK Y+ WD+SDK V ++E N L K K T S L L D
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251
Query: 310 LVINKLLEPINVADSHWKQK 251
+I+ L + + D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 244 YLFFVSNDCLPHL 282
++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 475 DTSFALELMYLLWVLVILPLASKFPXLLMLLVLS 576
D S A+ +W++ LP+A LL+LL+ S
Sbjct: 1560 DKSRAVNGFIRIWIMAALPIAISTAALLILLMFS 1593
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 337 DNLENKDYLLVINKLL 290
DNLEN DY+L + LL
Sbjct: 569 DNLENDDYVLALRDLL 584
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 310 ASNLYFPDCPHAAPLIYLSIYNIPVPLV 393
A YF DC HA + + YN V +V
Sbjct: 268 AEQTYFQDCMHAVTVDLMRKYNKEVAIV 295
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 346 LHVDNLENKDYLLVINKLLEP--INVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKK 173
+HV++ E + YLL I L P + + K+ D + +L SN T H +++
Sbjct: 409 VHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRE 468
Query: 172 FE 167
E
Sbjct: 469 RE 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,665
Number of Sequences: 5004
Number of extensions: 45846
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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