Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_P14
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059... 60 1e-09
09_02_0462 + 9583558-9584910 31 0.67
07_03_0674 + 20598668-20598774,20599456-20600467 30 1.2
08_02_0822 + 21549257-21550729,21550776-21550877 29 2.7
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282... 28 4.7
06_03_0515 + 21648685-21648707,21648790-21649291 28 6.2
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 6.2
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 28 6.2
>01_06_0764 -
31804811-31804915,31805013-31805072,31805720-31805959,
31807367-31807525,31807653-31807769
Length = 226
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/178 (26%), Positives = 81/178 (45%)
Frame = -2
Query: 538 TPMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTD 359
+P V+ + +A Y V L + WDQ + +K++V L+ V +++V
Sbjct: 56 SPPVVAAAAAPAPAAAAGVSY-VTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKP 111
Query: 358 KSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIE 179
S++ +++ K+Y I KL + I K K+++ L K++ W + E
Sbjct: 112 MSVDTKFHDVKGKNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKASKGN-WLDLHFKE 170
Query: 178 KKFEDQRNNRLKPAETDKKDPQXAXMRRMKXMXETGDDEMKRMSAQAGEEGQQRKKTE 5
KF KP+ +KDP M MK M E GD++MKR A+A + + K +
Sbjct: 171 DKF--------KPSMAKEKDPMSGIMDLMKNMYEEGDEDMKRTIAKAWSDARSGKTAD 220
>09_02_0462 + 9583558-9584910
Length = 450
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 145 KPAETDKKDPQXAXMRRMKXMXETGDDEMKRMSAQAGEEGQQRKKT 8
K A DKK + A R+K E D+EMK++ +A ++G ++ T
Sbjct: 151 KGAGKDKKAMRRAEKERLKE-GEAADEEMKKLKKEAKKKGASKEST 195
>07_03_0674 + 20598668-20598774,20599456-20600467
Length = 372
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 535 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 359
P +VSP P P++K + K ++Y FVK + ++ N H E ++ +L+
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276
Query: 358 KSMELHV 338
+ EL+V
Sbjct: 277 WAPELYV 283
>08_02_0822 + 21549257-21550729,21550776-21550877
Length = 524
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/41 (24%), Positives = 28/41 (68%)
Frame = -2
Query: 364 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDK 242
++K +E++ D +NK+ ++++ ++ E +N+ +SH + T +
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477
>02_03_0218 +
16526082-16526375,16526606-16526725,16528078-16528238,
16528601-16528634,16529296-16529398,16529784-16529963,
16530726-16530742
Length = 302
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 265 HWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLK 143
H + +K + F A S TW +T+I KFE R R++
Sbjct: 196 HTNVEPNKDIGFTA-SKQGETWERVTQIRDKFEYDRERRMR 235
>06_03_0515 + 21648685-21648707,21648790-21649291
Length = 174
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = -2
Query: 343 HVDNLENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFED 164
HV + + +N E + + D H K+K V +F+ S+P+ + + E E + E+
Sbjct: 67 HVQHYDVLKTFPEVNSDQELLVMFDLHNKKKV--VEMFIVYSDPSEPFKPINEWEFEEEE 124
Query: 163 QRNNRLKP 140
Q +N ++P
Sbjct: 125 QPDNNIEP 132
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 187 EIEKKFEDQRNNRLKPAETDKKDPQXAXMRRMKXMXETGDDEMKRMSAQA 38
E+E++ E R R+K E D+K P A RR T D + S +A
Sbjct: 361 ELERERERLRERRMKERERDRKHP--ADSRREHTPPRTPGDRRRSSSVRA 408
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2
Query: 538 TPMEVSPIPTTSTSAPVQKKYQVK-LNVYGWDQSDKFVK---VFVELKNVHTLPKEQVYC 371
+P ++ + + P K QVK LN G + + + + VF+ELKN L + +C
Sbjct: 466 SPSYLAKVQWDESFGPKMDKLQVKGLNHGGIESAKQALNESGVFLELKNALNLWRPLTFC 525
Query: 370 KLT 362
+LT
Sbjct: 526 RLT 528
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,558
Number of Sequences: 37544
Number of extensions: 256639
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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