Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P12
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    45   1e-05
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    40   2e-04
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.79 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   3.2  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   4.2  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   7.4  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   9.7  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   9.7  

>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -1

Query: 657 IMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQV--TRGLPHELFF 484
           ++  +YG    E IA IK LY ELQ+P  Y  FE+   D +  +I  +  + GL   +F 
Sbjct: 281 LLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCIFT 340

Query: 483 KILDNIFRRS 454
           K    I++RS
Sbjct: 341 KFFQLIYKRS 350


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = -1

Query: 657 IMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQV--TRGLPHELFF 484
           I++DNYG    E+  R+K ++EEL +   +  +EE+    ++  I  V  + GL   +F 
Sbjct: 277 ILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFT 336

Query: 483 KILDNIFRRS 454
             L  I++R+
Sbjct: 337 TFLGKIYKRN 346


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 597  YEELQLPHTYSVFEETTYD 541
            YE L LPHTY  FE  T D
Sbjct: 1316 YELLGLPHTYEAFETDTVD 1334


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 264 NFFSCAFIKSSAGAKTYNNNLQEFEIVIYIFV 359
           N + CA  K + GA  Y N LQ  + ++Y+ V
Sbjct: 712 NTYQCAMGKQAIGAIAY-NQLQRIDTLLYLMV 742


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 SRTISINHSFLDFDYNFFSCAFIKS 293
           S T+ I     +F+Y FFS AF K+
Sbjct: 218 SATVDIAKKICNFEYRFFSTAFEKA 242


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 581  YLIRTRSSKKLPTISLERRSNKSQGDYL 498
            YL    ++K++ T+SLE +   ++ DYL
Sbjct: 920  YLTIIEAAKRIATVSLESKLQFNESDYL 947


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 654 MEDNYGVNKPEAIARIKDLYEELQLPH 574
           ++ N+    P+AI R++ L+  L +PH
Sbjct: 281 IQTNHKHRNPDAIRRLQFLFPNLTIPH 307


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 G*ANISRTISINHSFLDFDYNFFSCAFIKSSAGAKTYNNNLQEFEI 341
           G + I   +S  +++L ++  FFS    +   GA TY+ +   F+I
Sbjct: 155 GKSYIGSKLSRYYNWLKYNCRFFSVGDKRREEGASTYSMSADFFDI 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,733
Number of Sequences: 5004
Number of extensions: 38852
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)