Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P12
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    33   0.24 
Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z78416-6|CAD44098.2|  624|Caenorhabditis elegans Hypothetical pr...    30   1.7  
DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin f...    30   1.7  
U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine rece...    29   2.9  

>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 9   INAYTNLQFFALCALQLHISNXXNXNXTXXXTXVLANNSFNYNQSLQSGALIYTLH 176
           I+ Y     F +C L   +S   +       T +L  N  NYN+S++S  L+  +H
Sbjct: 103 ISIYLLCVSFMVCVLSYTLSLRISSEYDTKMTTILMTNYLNYNESMESRRLVDRIH 158


>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 645 NYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQV 514
           ++G   PE + +IK +Y+ELQL   +  FE+     ++  I ++
Sbjct: 286 SFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEI 329


>Z78416-6|CAD44098.2|  624|Caenorhabditis elegans Hypothetical
           protein C23H4.7 protein.
          Length = 624

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -2

Query: 362 FNKNVDDDLKLLQIIIVCFGTG 297
           F+ +VD DLKL Q IIV  GTG
Sbjct: 221 FSNSVDPDLKLFQQIIVLSGTG 242


>DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin
           family protein protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 42  LCALQLHISNXXNXNXTXXXTXVLANNSFNYNQSLQSGALIYTLH 176
           +C L   +S   +       T +L  N  NYN+S++S  L+  +H
Sbjct: 2   VCVLSYTLSLRISSEYDTKMTTILMTNYLNYNESMESRRLVDRIH 46


>U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 8 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 246 FLDFDYNFFSCAFIKSSAGAKTYNNNLQEFEI-VIYI 353
           FLD  YN F+CA++  S     +   L+E ++ ++Y+
Sbjct: 54  FLDVTYNVFACAYMTFSILYSFFTEELREQQVFIVYV 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,253,705
Number of Sequences: 27780
Number of extensions: 213797
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)