Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P08
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0168 - 1385439-1385979,1386081-1387438                           27   3.9  
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004           27   5.2  
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    27   5.2  

>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 TFSMNISS*VSRFSKGDDMLFFIEIYTS 223
           TFS NI +   R ++GD M FF+  Y S
Sbjct: 97  TFSFNIVTPSDRNNRGDGMAFFLGSYPS 124


>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
          Length = 681

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 143 FSMNISS*VSRFSKGDDMLFFIEIYTS 223
           FS NI +   R  KGD M FF+  Y S
Sbjct: 96  FSFNIIAPSDRSKKGDGMAFFLTSYPS 122


>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 143 FSMNISS*VSRFSKGDDMLFFIEIYTS 223
           FS NI +   R  KGD M FF+  Y S
Sbjct: 99  FSFNIIAPSDRSKKGDGMAFFLTSYPS 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,045,429
Number of Sequences: 37544
Number of extensions: 100629
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)