Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P08
         (388 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003353-1|AAH03353.1|  135|Homo sapiens mediator of RNA polymer...    43   3e-04
AY598325-1|AAT06736.1|  135|Homo sapiens L6 protein.                   43   3e-04
AY453397-1|AAS47514.1|  135|Homo sapiens transformation-related ...    43   3e-04
AY277599-1|AAQ18038.1|  135|Homo sapiens transformation-related ...    43   3e-04

>BC003353-1|AAH03353.1|  135|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 10 homolog (NUT2, S. cerev
           protein.
          Length = 135

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -2

Query: 195 MSSPLENLETQLEMFIENVRQIRIIVSDFQP 103
           M+   ++LE  LE F+EN+RQ+ IIVSDFQP
Sbjct: 1   MAEKFDHLEEHLEKFVENIRQLGIIVSDFQP 31


>AY598325-1|AAT06736.1|  135|Homo sapiens L6 protein.
          Length = 135

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -2

Query: 195 MSSPLENLETQLEMFIENVRQIRIIVSDFQP 103
           M+   ++LE  LE F+EN+RQ+ IIVSDFQP
Sbjct: 1   MAEKFDHLEEHLEKFVENIRQLGIIVSDFQP 31


>AY453397-1|AAS47514.1|  135|Homo sapiens transformation-related
           protein 20 protein.
          Length = 135

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -2

Query: 195 MSSPLENLETQLEMFIENVRQIRIIVSDFQP 103
           M+   ++LE  LE F+EN+RQ+ IIVSDFQP
Sbjct: 1   MAEKFDHLEEHLEKFVENIRQLGIIVSDFQP 31


>AY277599-1|AAQ18038.1|  135|Homo sapiens transformation-related
           protein 17 protein.
          Length = 135

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -2

Query: 195 MSSPLENLETQLEMFIENVRQIRIIVSDFQP 103
           M+   ++LE  LE F+EN+RQ+ IIVSDFQP
Sbjct: 1   MAEKFDHLEEHLEKFVENIRQLGIIVSDFQP 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,469,954
Number of Sequences: 237096
Number of extensions: 584323
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)