Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P05
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   1.8  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   4.2  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   9.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.7  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   9.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 316 LSNQNMVKYLISLKQIVFLPI*QIACLFLWLLLK 215
           + N  +V  LISLK+ VFL I  +  LF   LLK
Sbjct: 16  IDNNYLVTTLISLKENVFLHIFTLTFLFKAFLLK 49


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 278 ETNSLFTNITNSLSVFMVT 222
           E   +FT +TNSLS F+VT
Sbjct: 455 EKTDIFTMLTNSLSSFLVT 473


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -2

Query: 332 GEFSLTVQSEYG*VSDKFETNSLFTNIT------NSLSVFMVTV-KIMHAIEMKF*DL*R 174
           G+ SL    +Y  +SD   + +L+TN+T        +S  +VT  K++  + M+F     
Sbjct: 748 GQASLLSLKQYTTLSDYLLSRNLYTNLTICEGYKKQISSLLVTARKLLQLVNMEFNLKGP 807

Query: 173 F*VXIYD 153
           F V IY+
Sbjct: 808 FPVGIYN 814


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/67 (19%), Positives = 30/67 (44%)
 Frame = +3

Query: 243  AICYIGKKTICFKLIRYLTIF*LDS*RKFSCRNPC*MIPDASVQKYYVTFFYIKLQTITD 422
            ++C IGK  +C+   R + +  LD   K  C + C +   + +        Y+   ++ D
Sbjct: 883  SVCSIGKHGLCYATGRKIGVKMLDLDSKKFCNSDCELPVRSPIVSMSTYKDYVYTSSLRD 942

Query: 423  MITLWYW 443
             + ++ +
Sbjct: 943  SVAVFQY 949


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 620  LSKVRQYYNVPDFLPSDAEFSGTENIFFGYE 528
            ++  + YYN+    P +  F+G ++  FGYE
Sbjct: 1262 MNDTQAYYNMNAQTPVNYGFAGGQDTSFGYE 1292


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 632 HPEILSKVRQYYNVPDFLP 576
           HP++  K+++Y N   F+P
Sbjct: 340 HPDVFEKLKEYVNQNKFIP 358


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 366 SVQKYYVTFFYIKLQTITDMITLWYWCNRPYFVTTYLTLPHQS*YVIQMHNCS 524
           +++ Y   F  I  +T+T+ ++ W +   P+F  + +   H    +I+ H  S
Sbjct: 82  TLEVYDYIFTIIGSKTLTNELSTWSYGLTPFFSISSIKTKHDYINIIKKHYVS 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,062
Number of Sequences: 5004
Number of extensions: 53449
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)