Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_P04
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 141 4e-34
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 140 1e-33
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 130 8e-31
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 33 0.17
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 31 0.68
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 141 bits (342), Expect = 4e-34
Identities = 86/205 (41%), Positives = 111/205 (54%), Gaps = 5/205 (2%)
Frame = -1
Query: 700 MAVGDVKTAQGLNDLNQYLAEKXYVXGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 521
+ + +V + GL L++YL + Y+ GY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 520 -----SYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXX 356
S +AE + ++ DVDLFG
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE- 140
Query: 355 XXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLV 176
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLV
Sbjct: 141 -----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLV 195
Query: 175 PVGYGINKLQIMCVIEDDKVSVDLL 101
PVGYGI KLQIM I DD VSVD L
Sbjct: 196 PVGYGIKKLQIMMTIVDDLVSVDSL 220
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 140 bits (339), Expect = 1e-33
Identities = 84/204 (41%), Positives = 108/204 (52%), Gaps = 4/204 (1%)
Frame = -1
Query: 688 DVKTAQGLNDLNQYLAEKXYVXGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTS 509
D+ TA GL L Q+L+ K YV G S+ D++VF V P A P+ RWY+ +A+ +
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 508 AERKTWSQGTS----PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRL 341
+ + G + D+DLFG
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD------- 119
Query: 340 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 161
+ A K S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYG
Sbjct: 120 ERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYG 179
Query: 160 INKLQIMCVIEDDKVSVDLLTRKN 89
I KLQIM I DD VSVD L ++
Sbjct: 180 IKKLQIMLTIVDDLVSVDSLIEEH 203
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 130 bits (315), Expect = 8e-31
Identities = 83/204 (40%), Positives = 104/204 (50%), Gaps = 8/204 (3%)
Frame = -1
Query: 688 DVKTAQGLNDLNQYLAEKXYVXGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----- 524
+V + GL L++YL + Y+ GY S D+ V+ AP+++ +V RW+ I
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 523 ASYTSAER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXX 353
S +A+ K S DVDLFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 352 XXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVP 173
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVP
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVP 180
Query: 172 VGYGINKLQIMCVIEDDKVSVDLL 101
VGYGI KLQIM I DD VSVD L
Sbjct: 181 VGYGIKKLQIMMTIVDDLVSVDSL 204
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = -1
Query: 667 LNDLNQYLAEKXYVXG--YTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 524
L +LNQ L++K + G + PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 31.5 bits (68), Expect = 0.68
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +3
Query: 30 FRFCXXXXXXXXXXXXXILEFFLVSKSTETLSSSMTHIICSLFMPYPTGTSLEAPQRRPS 209
FRFC L F L SK TE + +TH+IC + +G EA R
Sbjct: 602 FRFCVSQYEEKDRLLLKNLCFILGSKFTEKATKKVTHLICK----FASGPKYEAYYSRGI 657
Query: 210 ISIVRTW 230
+I W
Sbjct: 658 PTITAEW 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,487,834
Number of Sequences: 37544
Number of extensions: 352453
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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