Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P04
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   180   1e-45
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   124   5e-29
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    30   1.9  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  180 bits (437), Expect = 1e-45
 Identities = 100/204 (49%), Positives = 124/204 (60%), Gaps = 3/204 (1%)
 Frame = -1

Query: 694 VGDVKTAQGLNDLNQYLAEKXYVXGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIAS 518
           V DVK+  GL   N  LAE+ +  G+  S  D Q+F  +G AP A+  P+V RWY  +AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 517 YTSAERKTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXR 344
           YT AERKTW+   G++P                      DLFGS               R
Sbjct: 62  YTDAERKTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEER 109

Query: 343 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 164
           L AYA+KK+KK   IAKSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GY
Sbjct: 110 LAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGY 169

Query: 163 GINKLQIMCVIEDDKVSVDLLTRK 92
           GI KLQI+ VIED KVSVD L  K
Sbjct: 170 GIKKLQIITVIEDLKVSVDDLIEK 193



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/22 (77%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -2

Query: 96  EKIQ-EFEDFVQSVDIAAFNKI 34
           EKI  +FED VQSVDI AFNKI
Sbjct: 192 EKITGDFEDHVQSVDIVAFNKI 213


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  124 bits (300), Expect = 5e-29
 Identities = 63/105 (60%), Positives = 74/105 (70%)
 Frame = -1

Query: 406 DLFGSGXXXXXXXXXXXXXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 227
           DLFGS               RL AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 226 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTRK 92
           VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSVD L  K
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 243



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/22 (77%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -2

Query: 96  EKIQ-EFEDFVQSVDIAAFNKI 34
           EKI  +FED VQSVDI AFNKI
Sbjct: 242 EKITGDFEDHVQSVDIVAFNKI 263


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = -1

Query: 289 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 110
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y   ++     I    V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489

Query: 109 DLLTRKN 89
             +T K+
Sbjct: 490 HFITPKH 496


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 484 PETMFCVQPKCMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIXTRXFSQ 642
           P  + C QP CM   + + VV+     PAP Q     + Q +++C+ T+   Q
Sbjct: 124 PAPVQC-QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 214 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTRKNSRI 80
           E E  L G+  LVPV    N+LQI+C       DD V +   T + + I
Sbjct: 14  EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEI 62


>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
 Frame = +2

Query: 239 FLHIGFIIPWLDIKENRGLGNESWFLRLLV-SICFQTFFSNSFSFCILFLVTRTK*INVV 415
           FL+I  I     +K++    NE   +R+LV +I    FF  S S   +FL+ +T   N  
Sbjct: 291 FLYIAVIFKIFAMKKSTLNKNE---IRVLVQAIVIFVFFQASSS---VFLICQTIAFNTA 344

Query: 416 VIVVFRCWGGSRGFSTGGQWAGALRPCFAFSRSV*SNLIIPS*YVGKVSGRRLANLL 586
              V +     R  +T   +AGA  PCF+F  S     ++ S  +  VS +  +NL+
Sbjct: 345 TAFVIK-----RIINTLEIFAGAATPCFSFFTSKEIRKLLSS-KIAAVSSQGSSNLV 395


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 188 LQTCACWVWHK*TANYVCH 132
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 188 LQTCACWVWHK*TANYVCH 132
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +2

Query: 206 FHFNSAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFL 385
           FHF+   +++  +     + W  + ++  + +  ++L ++V I    F+  SF+  IL L
Sbjct: 391 FHFDIQLILYAAIFAFLSLTWPSVFKSSNIISNKYYLPVMVRIHVVLFYFGSFASNILPL 450

Query: 386 V 388
           V
Sbjct: 451 V 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,354
Number of Sequences: 27780
Number of extensions: 297735
Number of successful extensions: 912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)