Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P03
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    29   0.48 
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   1.5  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    26   2.6  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.6  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   3.4  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   3.4  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   4.5  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    25   7.8  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    25   7.8  

>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 338 GHSRQITSDLRKKSIVLRINHGVNKYG*TY*SLFYLVYGYSSAGRI 475
           G  + +  D+  K I++  NHG+     +  + +YL+Y + +A  I
Sbjct: 218 GEQKSLAEDIANKDILILRNHGIITAAESVGAAYYLMYQFLAATEI 263


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -3

Query: 179 GFTFKQIIGNERKRK--YAEFYRTYDAEKE-FEEMRKK 75
           G T+  I    + RK  Y ++Y T+D  KE F+E++K+
Sbjct: 362 GRTYNVISSMSKARKLGYTDYYDTFDGFKETFDELKKQ 399


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 227 VIKRNIIVALALSGVAGFTFKQIIGNER 144
           V  R IIV  A   VA FTF+Q+ G  +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 315 NFSKNIIRHGWRKCSIDSEQASDA 244
           N SK +I++GW + S++SE  SDA
Sbjct: 472 NKSKYLIKNGWFEDSLNSEIWSDA 495


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 92  EEMRKKGXFQACERXTSRVEDDDDF 18
           EE RKKG  +  E    ++ DDDDF
Sbjct: 129 EEERKKGDAKKSEATGRQLFDDDDF 153


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 334 SGSQSSDNFRFEKKIY 381
           +GS++ D++RF KKIY
Sbjct: 258 AGSENMDHYRFAKKIY 273


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -2

Query: 294 RHGWRKCSIDS---EQASDARSPQCRHQT*HYCCFGSLWR 184
           +HGWRK SI S   ++ +      C  +   YC  G  WR
Sbjct: 28  KHGWRKQSIYSLLTDRFASTNPKPCNPEDREYC--GGNWR 65


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 146 RKRKYAEFYRTYDAEKEFEEMRKKGXFQACERXTSRVEDD 27
           RKR  A+    Y+A K    +R    F  C+  +SRV  D
Sbjct: 33  RKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGD 72


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 146 RKRKYAEFYRTYDAEKEFEEMRKKGXFQACERXTSRVEDD 27
           RKR  A+    Y+A K    +R    F  C+  +SRV  D
Sbjct: 33  RKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGD 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,318
Number of Sequences: 5004
Number of extensions: 31124
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)