Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P03
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204...    29   2.6  
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621...    28   3.4  
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548...    27   6.0  
08_02_0340 + 15981210-15981467                                         27   7.9  

>08_02_1465 -
           27319377-27319405,27319936-27320101,27320336-27320444,
           27320865-27321448
          Length = 295

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 154 PMICLKVKPATPERAKATIMLRLMTALRRPR 246
           P ICL   PA     +  ++ RL + LRRPR
Sbjct: 141 PTICLVFDPAVSPHFEVLVIPRLRSELRRPR 171


>04_04_1032 -
           30259180-30260519,30260650-30260720,30261099-30262118,
           30263886-30264121
          Length = 888

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 116 TYDAEKEFEEMRKKGXFQACERXTSRVEDDDD 21
           ++ AE++  E  +K    +CER  S  E +DD
Sbjct: 381 SFSAEQKISEFAEKQRSDSCERECSETETEDD 412


>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
            34355193-34355261,34355502-34355606,34355992-34356161,
            34356244-34356351,34356397-34356525,34356577-34356681,
            34357186-34357475,34357575-34357679,34358195-34358289,
            34358474-34358569,34358660-34358782,34359120-34359174,
            34359254-34359417,34359881-34359971,34360180-34360334,
            34360823-34361002,34361314-34361487,34361776-34361917,
            34362023-34362325,34362443-34362522
          Length = 1354

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 38   LCSFXFRRLGXDPSCASPQIPFQHHRFC--RIQHTFSCA 148
            +CS  +R+    P    P   F+HH     RI+H F  A
Sbjct: 1286 VCSAEWRKRWPSPPARQPSPGFKHHHLAELRIRHAFGVA 1324


>08_02_0340 + 15981210-15981467
          Length = 85

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 290 MAGESAVSTASKPQMR-GLLNAVIKRNIIVALALSGVAGFT 171
           MA   A    ++PQ+R GL+ A I  ++I ALA  GV G T
Sbjct: 1   MATTLADEKQNQPQIRFGLIVACILLDVIPALAAEGVDGDT 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,957
Number of Sequences: 37544
Number of extensions: 190498
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)