Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_P03
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical ...    39   0.002
Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical p...    38   0.003
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    29   1.7  
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    28   4.0  
AF067616-8|AAC19190.1|   90|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    27   9.3  
AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical...    27   9.3  

>AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical
           protein Y111B2A.2 protein.
          Length = 86

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -3

Query: 245 RGLLNAVIKRNIIVALALSGVAGFTFKQIIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 72
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD     +E+    KG
Sbjct: 4   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDPYTRMKEICAANKG 63

Query: 71  XFQACERXTSRVEDDDDFAV 12
               C +  +++ ++   AV
Sbjct: 64  YMHTCPKELAKLYEEKGKAV 83


>Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical
           protein B0035.18 protein.
          Length = 90

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 245 RGLLNAVIKRNIIVALALSGVAGFTFKQIIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 72
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD+    +E+    KG
Sbjct: 8   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDSYTRMKEICSANKG 67

Query: 71  XFQACERXTSRVEDD 27
               C +  +++ ++
Sbjct: 68  YMHTCPKELAKLYEE 82


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 60  GLEXTLLAHLLKFLFSIIGSVEFSIL-SLALITNDLLEGKTSDARESQSNNN 212
           G++ TL+A+   FL    G +E  +  S++LI+ DLLEG        + NNN
Sbjct: 84  GMKQTLVANR-DFLILAAGHLENLLRNSISLISIDLLEGADFSENSDRDNNN 134


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
            protein Y113G7C.1 protein.
          Length = 1494

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
 Frame = -3

Query: 284  GESAVSTASKPQMRGLLNAVIKRNIIVALALSGV--AGFTFKQ------IIGNERKRKYA 129
            G S V+   +P     L  VI    +VA+ L+GV   GF F+Q          E+KRK  
Sbjct: 971  GSSPVNKRKEPVDFPTLAVVIP---LVAMLLAGVAIGGFLFRQHKIHEKDREEEKKRKTQ 1027

Query: 128  EFYRTYDAE---KEFEEMRKKGXFQACERXTSRVEDD 27
            +F    DA+    E +E R+K   +  ++   R + D
Sbjct: 1028 DFQDQQDADIERAEADEQRRKMNVERAKKDEERAKKD 1064


>AF067616-8|AAC19190.1|   90|Caenorhabditis elegans Hypothetical
           protein F29C4.2 protein.
          Length = 90

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = -3

Query: 245 RGLLNAVIKRNIIVALALS--GVAGFTFKQIIGNERKRKYAEFYRTYDAEKEFEEM--RK 78
           R +L+   +R I ++L  S    A F F  +    R  KY  F+  YD     +E+    
Sbjct: 8   RNMLHQYGRRAIGISLIASVGATAAFFFGYV--QPRHEKYERFFANYDPYTRMKEICAAN 65

Query: 77  KGXFQACERXTSRVEDD 27
           KG    C +  +++ ++
Sbjct: 66  KGYMHTCPQELAKLYEE 82


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 167 KQIIGNERKRKYAEFYRTYDAEKEFEEMRKKGXFQACERXTSRVEDDDDFAVNNV 3
           KQ+   E+KR+     R  +  K  EE+R+ G  +A E   S VE  +D+   +V
Sbjct: 686 KQVEEVEQKRRRGAVARVKENVKMHEELREGGNHRA-EDLQSGVESMEDYQPEDV 739


>AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.17 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +3

Query: 63  LEXTLLAHLLKFLFSIIGSVEFSILSLALITNDLLEGKTSDARESQSNNNVTFDDGIEET 242
           LE     HL  F    I  + FSI +     +DLL+ KT ++   +      F  G+ +T
Sbjct: 225 LECPPFEHLFHFQTFEIHILNFSIENAIQFRDDLLKRKTFESCTVRFGGTTEFITGLIQT 284

Query: 243 SHLRLARCRY 272
              R+ +  Y
Sbjct: 285 EVARVFKSDY 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,605,048
Number of Sequences: 27780
Number of extensions: 175444
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)