Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_O20
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    31   0.20 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    30   0.26 
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   4.2  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   9.7  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 367 RRWISQLMVLVFTSREVTMVFEWRLSSASGNTVGFIKNNKNS 492
           RRWI     +++    V+ V    L   SGN +G +KNN+ S
Sbjct: 281 RRWIVYPAAMIWPQTLVSTVLFRTLHGNSGNDIGVLKNNRIS 322


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 650 HVLEFVCQSVKKGYIV-TPKFDLNTNVRNESCYLSIVLACIR*MCGIIHLKQIVEFLL 480
           H+   V   +K   +V  P  DL     +E C+LS VL      C    L  +VE+LL
Sbjct: 689 HIEHSVISQIKSELLVRVPNIDLKPLSTSEICFLSAVLLLESLRCKSNKLSALVEYLL 746


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 172 NSILFTETFCLYNYRFIISETNTKYKLKLGHGLNSL 279
           NS L T T  + NY    S T T Y    G GLNS+
Sbjct: 96  NSALTTVTDGMLNYYQSTSHTFTAYWWMTGAGLNSM 131


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 463 VGFIKNNKNSTICLRCMIPHIYRIHANTI 549
           VG+IK+ +  T+    MIP I  + AN I
Sbjct: 256 VGYIKDYEGGTLMQCTMIPKIKYLEANLI 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,751
Number of Sequences: 5004
Number of extensions: 59194
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)