Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_O18
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.2 protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 311 CRNFKCYLSHRA*MSRGAHVIRRLXG 388
           C+N KC L H+  M RG+ V R + G
Sbjct: 72  CKNQKCLLKHQIVMKRGSAVEREISG 97


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/41 (26%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -3

Query: 166 LKYVDVSINXIAIT-VNFNKINFNVS-KLFLNWFTLSFIQS 50
           ++Y+   I+ I ++ ++F   N+ ++  +F+ W T+SF+Q+
Sbjct: 171 IQYLRNVIHRIGVSHMSFTNFNYGIAYSIFIIWLTISFVQN 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,852,208
Number of Sequences: 27780
Number of extensions: 241301
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)