Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_O12
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1156 - 30814037-30814190,30814277-30815166 44 2e-04
01_06_0369 - 28794283-28794427,28794865-28795874 37 0.019
07_01_0065 + 466416-467465 34 0.13
09_02_0327 - 7284829-7284889,7284946-7286126 32 0.54
10_08_0673 + 19776227-19776322,19776446-19776641,19777119-197771... 30 2.9
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911 29 5.0
01_01_0627 + 4725891-4725977,4727389-4727584,4727836-4727934,472... 29 5.0
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 29 6.7
02_05_0429 - 28916583-28916882,28917286-28917408,28917484-289175... 29 6.7
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 8.8
09_02_0002 - 2860931-2861159,2861564-2861688,2861946-2862131,286... 28 8.8
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 28 8.8
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 8.8
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 28 8.8
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 28 8.8
01_06_0495 - 29779499-29781325 28 8.8
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 28 8.8
>03_05_1156 - 30814037-30814190,30814277-30815166
Length = 347
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = -3
Query: 299 LDGAYFCFISLSSIGFGDFVPGERVYTPRIETSFIACSMYLMLGMALVAMCFN-----LM 135
LD YFC ++++++G+GD VP T +AC+ ++ +GMA+VA+ + L+
Sbjct: 98 LDALYFCVVTMTTVGYGDLVPNNDT------TKLLACA-FVFMGMAVVALFVSKVADYLV 150
Query: 134 QEQVIHYFAGLKRVLK 87
++Q + +F L LK
Sbjct: 151 EKQEVLFFKALHTNLK 166
Score = 33.9 bits (74), Expect = 0.18
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = -3
Query: 899 YSLTVITXIGYGHLSPRTNWGKVVTILYTLLGMPLFLLYLTNLGELLARWFKCIYALVCH 720
+ + +T +GYG L P + K++ + +GM + L+++ + + L + ++ H
Sbjct: 103 FCVVTMTTVGYGDLVPNNDTTKLLACAFVFMGMAVVALFVSKVADYLVEKQEVLFFKALH 162
Query: 719 CRGCPGFTK 693
G TK
Sbjct: 163 TNLKGGETK 171
>01_06_0369 - 28794283-28794427,28794865-28795874
Length = 384
Score = 37.1 bits (82), Expect = 0.019
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -3
Query: 380 ISVCVCIMVGYIIFGSMLFGMW--ENWDQLDGAYFCFISLSSIGFGDFVPGERVYTPRIE 207
+SV + I +G +++ + + G +DG YF ISL +IG+GD VP
Sbjct: 107 VSVILYISIGVLVYITNVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTF------ 160
Query: 206 TSFIACSMYLMLGMALVAMCFNLMQEQVI 120
T C ++L++G+ V + N + V+
Sbjct: 161 TKVFTC-LFLLIGVRFVDIVLNELLTNVL 188
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 899 YSLTVITXIGYGHLSPRTNWGKVVTILYTLLGMPLFLLYLTNL 771
+++ + IGYG + P T + KV T L+ L+G+ + L L
Sbjct: 141 FTIISLCTIGYGDIVPCTTFTKVFTCLFLLIGVRFVDIVLNEL 183
>07_01_0065 + 466416-467465
Length = 349
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = -3
Query: 362 IMVGYIIFGSMLFGM-------WENWDQLDGAYFCFISLSSIGFGDFVPGERVYTPRIET 204
++V Y++ G++ F + LD YFC ++++++G+GD VP
Sbjct: 71 LLVAYLLLGTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDA------A 124
Query: 203 SFIACSMYLMLGMALV 156
+AC+ ++ G+A+V
Sbjct: 125 KLLACA-FVFAGVAVV 139
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -3
Query: 296 DGAYFCFISLSSIGFGDFVPGERVYTPRIETSFIACSMYLMLGMALVAMCFNLMQEQVIH 117
D YFC ++L +IG+GD P TP + I+ ++++G V + + M V+
Sbjct: 192 DALYFCIVTLCTIGYGDITPA----TPAAKLFSIS---FVLIGFGFVDILLSGMVSYVLD 244
Query: 116 YFAGLK-RVLKRVSRCKR*RHTSLQQPRRSTMWPRIVI 6
L LK ++ RH + ++ M R+ +
Sbjct: 245 LQEHLLITALKNPRSVRKHRHNYIFDLKKGRMRVRMKV 282
>10_08_0673 +
19776227-19776322,19776446-19776641,19777119-19777199,
19777265-19777316,19777451-19777572,19778377-19778477,
19778650-19778708,19778807-19778863,19779227-19779272,
19779506-19779585,19779675-19779735
Length = 316
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 782 LTNLGELLARWFKCIYALVCHCRGCPGFTKRRAARF 675
+ N+G+LL RW CIY H G + AA F
Sbjct: 239 IVNIGDLLERWTNCIYRSTVHRVVAVGKERYSAAFF 274
>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
Length = 575
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = -3
Query: 767 ELLARWFKCIYALVCHCRGCPGFTKRRAA------RFRQQLDISDAESIERPPHWRSGYL 606
ELLAR F ALV C GF+ A + ++LD+ + E +R P W S +
Sbjct: 118 ELLARSFPRFRALVLI--SCEGFSTDGLAAVASHCKLLRELDLQENEVEDRGPRWLSCFP 175
Query: 605 DSDCT 591
DS CT
Sbjct: 176 DS-CT 179
>01_01_0627 +
4725891-4725977,4727389-4727584,4727836-4727934,
4728392-4728443,4728662-4728798,4728880-4728980,
4729072-4729130,4729285-4729341,4729476-4729521,
4729650-4729729,4729835-4729925
Length = 334
Score = 29.1 bits (62), Expect = 5.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 785 YLTNLGELLARWFKCIYALVCH 720
++ NLG++L RW CI+ H
Sbjct: 246 FIVNLGDMLERWSNCIFRSTLH 267
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 551 RRPDYFRSASMPQPWERREVLPAQPRGWSEPL 456
RR +R P P ERR L PRG+ PL
Sbjct: 111 RRRFAYRERHCPPPAERRRCLVPAPRGYRAPL 142
>02_05_0429 -
28916583-28916882,28917286-28917408,28917484-28917561,
28917889-28917950,28918260-28918347
Length = 216
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 543 RLLPQCVNASALGEAGGAPSTAAGLVGAPR 454
R LP C A + G+P A G+V APR
Sbjct: 168 RRLPDCAGACPCRASFGSPCGAGGVVSAPR 197
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 627 WRSLNTFSVTYIQLLSKSGSTSFGESWTSPAVANQCIDAFEPPS 758
W + ++F + G + + T A A +C+D FEP S
Sbjct: 2759 WITFSSFPTHHCTTYGYCGPNGYCDITTGAAAACKCLDGFEPAS 2802
>09_02_0002 -
2860931-2861159,2861564-2861688,2861946-2862131,
2862307-2862450,2863542-2863684,2865551-2865800
Length = 358
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 354 WVYNIRLNAVRYVGELGPAGRRVLL 280
WV + R VR +G+ GPAG V L
Sbjct: 23 WVNDYRFRVVRRLGDAGPAGSFVFL 47
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 694 LVNPGHPLQWQTNA*MHLNHRARSSPRLVKYR 789
+V P P+QW ++ +H R SSPRL R
Sbjct: 525 MVPPLPPMQWLSSIKVHSGSRVASSPRLKTLR 556
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 9 DNSWPHRTPSGLLKTGVTSSLAARNPLQNPLQTSKVM 119
+ SW RTPS + +S + +P NPL +++
Sbjct: 338 ETSWAKRTPSATILMAAATSQSFLSPAPNPLLRPRIL 374
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 425 RWCPPSPS*RRGAPTSPAAVLGAPPASPRAEA 520
R PP P + AP +PA V A P S AE+
Sbjct: 274 RPAPPKPEKQSPAPPAPAPVADATPFSSNAES 305
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 589 GVQSESKYPDLQCGGRSILSASLISNCCLNLAARLLVNPGHPLQWQ 726
G S + P+L+C GRSIL S RLL H W+
Sbjct: 378 GSDSSNNDPELECIGRSILPKLKGSPLAAKTLGRLLRMDHHTTHWK 423
>01_06_0495 - 29779499-29781325
Length = 608
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 367 TQTLIGTVIV*ASKVT*LNSLVPSESVLKARGSDQPRGC 483
T L GT+I S++ L+ + S L RGSD P GC
Sbjct: 49 TPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGC 87
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 437 PSPS*RRGAPTSPAAVLGAPPASPRAEALTHCG 535
PSPS AP SP+ V G+ ASP++ CG
Sbjct: 89 PSPSPSPNAPVSPSPVNGSGHASPKSPT-PSCG 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,234,299
Number of Sequences: 37544
Number of extensions: 683157
Number of successful extensions: 2372
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2369
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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