Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_O11
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    81   1e-16
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.2  
SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    25   9.5  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 42/77 (54%), Positives = 50/77 (64%)
 Frame = -3

Query: 649 VKNLXALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQ 470
           VK L   P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW +L G SKEDA 
Sbjct: 12  VKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKEDAA 70

Query: 469 KAYIEIVEGLIASIGLK 419
             YI  V+ L    G+K
Sbjct: 71  SEYISFVDELKTKYGMK 87


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 177  EEQ*NNLRPFRNHVLKVYYVLGRSVLYLFWLRIF 76
            +EQ N+ +PF+++++++Y +      Y FW + F
Sbjct: 4026 DEQGNSRKPFKDYIIQLYSL---KYDYDFWFKYF 4056


>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 478 PPSKCRPVCAKRQIWLYPSSLEDQVYWLDRH 570
           PP     +     +W Y  S  D +Y L++H
Sbjct: 85  PPGTRESLLQSAVVWEYQKSRNDNLYLLEKH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,063
Number of Sequences: 5004
Number of extensions: 45347
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)