Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_O09
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    37   8e-04
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   1.1  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    24   5.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    24   7.6  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -1

Query: 183 FPDKEQRKKCWDARDKYWECLDSQNIKDSSQKPLACTNFRKIFEKSCPTQWVTHFERKRD 4
           FP+  Q K C+ +   Y+ C     IK   +  + C  F   ++  CP +WV  ++ +R+
Sbjct: 21  FPNTNQTKHCFQSYIDYFRC-----IKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRE 75


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 218 LDKASDRFRIFPNIYLNV 271
           +DKA+D+F + PN+ LN+
Sbjct: 11  IDKATDQFNLEPNLALNI 28


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/18 (50%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -1

Query: 144 RDKYWECLDSQN-IKDSS 94
           ++K W+CLD +N IK++S
Sbjct: 637 KEKLWKCLDLENTIKENS 654


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 117 SQNIKDSSQKPLACTNFRKIF 55
           S  +++SSQ+PL   N+ +I+
Sbjct: 16  SMELEESSQEPLRADNYEEIY 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,393,981
Number of Sequences: 5004
Number of extensions: 27499
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)