Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_O09
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0815 + 21493696-21493812,21493912-21494049,21494134-21494250 37 0.004
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 33 0.045
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 32 0.11
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 31 0.24
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 29 0.74
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 27 3.0
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 27 3.0
01_06_0237 + 27770777-27771120,27771209-27771438,27771951-277720... 27 3.9
05_07_0090 - 27625611-27625787,27626181-27626204,27626727-276267... 26 9.1
01_01_0938 + 7400843-7401522,7402192-7403065 26 9.1
>08_02_0815 + 21493696-21493812,21493912-21494049,21494134-21494250
Length = 123
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -1
Query: 165 RKKCWDARDKYWECLDSQNIKDSSQ-------KPLACTNFRKIFEKSCPTQWVTHFERK 10
R+ C+ ARD ++ C++ K ++ P C R F SC WV HF+R+
Sbjct: 34 REACYKARDAFYTCVEKHADKKPTEIATMGLLYPADCKKSRANFVNSCRPSWVKHFDRQ 92
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 33.5 bits (73), Expect = 0.045
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 183 FPDKEQRKKCWDARDKYWECLDSQNIKDSSQKPLACTNFRKIFEKSCPTQWVTHFERKRD 4
FP Q + C+ +Y C+ ++ +D+ + C F K + CP +WV + +R+
Sbjct: 107 FPTTNQTRHCFTRYVEYHRCVAAKG-EDAPE----CDKFAKYYRSLCPGEWVERWNEQRE 161
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = -1
Query: 183 FPDKEQRKKCWDARDKYWECLDSQNIKDSSQKPLACTNFRKIFEKSCPTQWVTHFERKRD 4
FP Q + C+ +Y C+ ++ + C F K + CP++W+ + +R+
Sbjct: 193 FPTTNQTRHCFTRYIEYHRCVAAKG-----EGAPECEKFAKYYRSLCPSEWIERWNEQRE 247
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 84 MVSVNCP*YSESLSTPSIYLWRPSTFFFALYQERTSLST*IEIKT 218
M S +C S S I W PST AL RTSLST + K+
Sbjct: 322 MTSADCREMSWLQSAALIQFWNPSTPVEALLNRRTSLSTFTKAKS 366
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 29.5 bits (63), Expect = 0.74
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = -1
Query: 183 FPDKEQRKKCWDARDKYWECLDSQNIKDSSQKPLACTNFRKIFEKSCPTQW 31
FP Q + C+ +Y C++++ + C F K + CP +W
Sbjct: 30 FPTTNQTRHCFTRYIEYHRCVNAKG-----EATADCEKFAKYYRSLCPAEW 75
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 23 CVTHWVGQDFSNIFLKFVQANGFCELSLIF*ESK 124
C W G N+ L+F+ +NG L +I K
Sbjct: 460 CGFSWSGHPIGNLSLQFINSNGLTGLKIILYRGK 493
>02_05_1031 -
33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 27.5 bits (58), Expect = 3.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -1
Query: 78 CTNFRKIFEKSCPTQWVTHFERKR 7
CT + K + CP +W+ ++ +R
Sbjct: 19 CTKYAKCYRSLCPGEWIERWKEQR 42
>01_06_0237 +
27770777-27771120,27771209-27771438,27771951-27772092,
27772266-27772281
Length = 243
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 184 GHPYLRKLKSKLRQS*R*VSYIPKYLFKCFI 276
G PYLRK+ K+ S +S + +F CFI
Sbjct: 160 GAPYLRKVDLKMYSSYEDLSMALEKMFSCFI 190
>05_07_0090 -
27625611-27625787,27626181-27626204,27626727-27626755,
27626967-27627028,27627735-27627876,27628681-27628910,
27629570-27629943
Length = 345
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 184 GHPYLRKLKSKLRQS*R*VSYIPKYLFKCFI 276
G PYLRK+ K S +S + +F CFI
Sbjct: 170 GAPYLRKVDLKTYSSYEDLSLALEKMFSCFI 200
>01_01_0938 + 7400843-7401522,7402192-7403065
Length = 517
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 215 FDFNLRR*GCPFLIKSKEKSAGTPEINTGSA 123
FD +LR CP L+KS AG + G A
Sbjct: 268 FDLSLRCSVCPMLVKSSSVHAGANGVVKGLA 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,781,935
Number of Sequences: 37544
Number of extensions: 137377
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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