Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_O09
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   1.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   7.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.5  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 120 DSQNIKDSSQKPLACTNFRKIF 55
           ++ N  +++ K L C N+RK++
Sbjct: 87  NNYNYNNNNYKKLYCNNYRKLY 108


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 114 ESLSTPSIYLWRPSTFFF 167
           E L  PS ++WRP    +
Sbjct: 97  EMLHVPSDHIWRPDIVLY 114


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 141 LWRPSTFFF 167
           +WRP T+F+
Sbjct: 117 IWRPDTYFY 125


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 28  HPLGRAGLFKYFPKV 72
           HP  RA LF  FP +
Sbjct: 335 HPKYRAALFAKFPSL 349


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 4/9 (44%), Positives = 8/9 (88%)
 Frame = +3

Query: 141 LWRPSTFFF 167
           +W+P T+F+
Sbjct: 85  IWKPDTYFY 93


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 120 LSTPSIYLWRPSTFFF 167
           L  PS ++WRP    +
Sbjct: 103 LHVPSDHIWRPDIVLY 118


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 120 LSTPSIYLWRPSTFFF 167
           L  PS ++WRP    +
Sbjct: 103 LHVPSDHIWRPDIVLY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,945
Number of Sequences: 438
Number of extensions: 1651
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)